Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0620
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12210.2 68416.m01524 expressed protein                             46   4e-05
At4g39840.1 68417.m05645 expressed protein                             31   1.1  
At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    29   4.5  
At5g23680.1 68418.m02776 sterile alpha motif (SAM) domain-contai...    28   6.0  
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim...    28   7.9  
At3g31950.1 68416.m04046 hypothetical protein                          28   7.9  
At3g12210.1 68416.m01523 expressed protein                             28   7.9  

>At3g12210.2 68416.m01524 expressed protein
          Length = 209

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 26/85 (30%), Positives = 46/85 (54%)
 Frame = +2

Query: 2   LLAAASPEIAPFMADECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWF 181
           +LAA +P+IAPFM+DE ++ +      DY+ ++YL F + +++    L  +    G    
Sbjct: 125 VLAAYAPDIAPFMSDEAME-VALGNSKDYSLKQYLLFATKLQDKAKELKLKGEWDG---- 179

Query: 182 PHMVELALWTHNIVSDLQPQLLGKG 256
           P  +E ALW+  + +  QP+    G
Sbjct: 180 PSDIERALWSCTVRAKSQPEKSSSG 204


>At4g39840.1 68417.m05645 expressed protein
          Length = 451

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 301 DESNLEPPATNGKLVTDCVNEDTTTSCTE 387
           DE+NL PP    KL+TD V+  +++S T+
Sbjct: 63  DETNLPPPPKKKKLLTDSVSSSSSSSGTK 91


>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 223 IGLTTTVIRERPNNRPAAN-GGSPLPSDESNLEPPATNGKLVTDCVNEDTTTS 378
           +GL  +V+    N RP  +   SP+  +  +LEPP+ N  L+   + E    S
Sbjct: 292 LGLDNSVLELPSNQRPTHSFSSSPIIDNGVHLEPPSGNSGLLDALLEESQALS 344


>At5g23680.1 68418.m02776 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = +1

Query: 100 IPQFRKPHTKRL**VKRGTKRLRQEMVSTHGRAGPLDAQHCIGLTTTVIRERPNNRPAAN 279
           I     P T     V  G+KRLR+  V      G    QH +    +    RP  RP+  
Sbjct: 22  INSIEAPETSAAAGVSVGSKRLRRPSVRLGDIGGDQYHQHVVAAYDSPQVRRPKWRPSGG 81

Query: 280 GG 285
           GG
Sbjct: 82  GG 83


>At5g09740.1 68418.m01128 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 277 NGGSPLPSDESNLEPPATNG 336
           NG +P PS  SN +PPATNG
Sbjct: 10  NGNAPPPS--SNQKPPATNG 27


>At3g31950.1 68416.m04046 hypothetical protein
          Length = 507

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 GCGKKWFPHMVELALWTHNIVSDLQPQLLGKGPTTVRLQTA 283
           G G+K FP++V+ AL   N V DL+    G+   T+  +++
Sbjct: 448 GSGRKAFPNLVKFALGRGNSVRDLRIIACGRENLTMSKESS 488


>At3g12210.1 68416.m01523 expressed protein
          Length = 155

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +2

Query: 2   LLAAASPEIAPFMADE 49
           +LAA +P+IAPFM+DE
Sbjct: 125 VLAAYAPDIAPFMSDE 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,276
Number of Sequences: 28952
Number of extensions: 370295
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)