Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0619
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.47 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.62 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   7.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 480 HRFRYGHPPHSKIREE---YPDRIMNTYSVVPSPKV 578
           H  RYGH P+  + EE    PD I++ +     PK+
Sbjct: 305 HLRRYGHTPNVVLDEEGNPCPDIIIDVHGTRRGPKI 340


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 95   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVAWS 262
            N+I  + W +  D  G     AYHGD  +  E I    ++A   K       VAW+
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKAEYIKTKGFGGAVAWT 966



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 601  TTPHFQFIN*LKTQTKPTVSTTRLSTISASAR*NYPH 711
            TT H+Q      T T+PT + ++L      +   YPH
Sbjct: 1179 TTNHWQTKTTTSTTTRPTTTVSQLIDDKCDSGQYYPH 1215


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 394 DSVLDVVRKEAESCDCLQGF 453
           D V    RK AE C  LQGF
Sbjct: 233 DVVASNSRKTAEMCYKLQGF 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,923
Number of Sequences: 336
Number of extensions: 3417
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)