Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0619
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.96 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 391 VDSVLDVVRKEAESCDCLQG 450
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 121 LPELSSDLVAALTSLDMYDFPHFVLFM 41
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 447 GIPTDTLARRRHRFRYGHPPHSKIREEYPDRIMN 548
           GIP+ TL +R HR     P      + + D  +N
Sbjct: 438 GIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLN 471


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 170 DSDLQLERINVYYNEASGGKYVPRAILVAWSP 265
           D+ L+   I  Y N+  GG++V   I   W+P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTP 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,220
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)