Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0618
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 58 2e-09
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 29 0.59
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 3.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 7.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 7.3
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 7.3
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 7.3
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 9.7
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 9.7
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +1
Query: 487 RAQSVRGLPSLGENKPKTYLQLAGRILLAFMFITLLRFE---ISFLQIIQDLLGSILMIL 657
R GLP++ E+ +TY QLAGR+LL FMF+ LL E IS+ +I+ +L +
Sbjct: 168 RINRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRILVHILSVTACAM 227
Query: 658 VTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVP 753
V +G++ K N++W+VP
Sbjct: 228 VVIGFKAKFFAAVLVLILSVANFIINSFWSVP 259
Score = 34.3 bits (75), Expect = 0.021
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 150 LPTVARLCLISTFLEDGLRMWFQWSEQRDYM 242
+P + R +++T+ ED +R+ QW EQ YM
Sbjct: 54 MPLLGRFLIVATYFEDAIRIVTQWPEQVSYM 84
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 768 RDFLKYDFFQTLSVI 812
RDF +YDFFQTLS++
Sbjct: 265 RDFYRYDFFQTLSIV 279
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.59
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 78 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 218
QIP STA+ A+ + ++ + LP V C TF D L +FQ
Sbjct: 41 QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 372 KNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPRTCPCSLSALTTGT 211
KN PQ + + ++ PN P F++ + + PQP P S S TTGT
Sbjct: 19 KNGVPQEVIVIEDSASPRLTPNLPPPFSVHQLQSFVPPQP---PSSSSPSTTGT 69
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -3
Query: 423 NCT-SHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIV-ARNLPQPR 250
NCT S S+LY + T+ +T ++ S+P T T P + +TI++ + P
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST--PVTSSNYTISSSTPVTSTPVTT 588
Query: 249 T-CPCSLSALTTGT 211
T C S S L T T
Sbjct: 589 TNCTTSTSVLYTST 602
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -3
Query: 717 NCQYEDK---HQSRQLRPVAHRHQYHQDAPEKI--LYDLQE*DFKS*ERDEHEGQQ 565
N +DK H+S R ++ +YHQD P+K Y L+E D +R E E +Q
Sbjct: 256 NSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDK---QRKEFENRQ 308
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 183 TFLEDGLRMWFQWSEQRDYMDM 248
T +DGLR+W W +D D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 408 SILYANVCNTTMKNSTPQAISTLSLPSTITH 316
+I +N NTT ST Q S+ +PS + H
Sbjct: 48 AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 381 TTMKNSTPQAISTLSLPST-ITHPP 310
T STPQ +T S P+T THPP
Sbjct: 279 TPQSGSTPQMQNTTSQPTTHDTHPP 303
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.3
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Frame = +1
Query: 157 LW-RDCALYP-HSWRTVSACGSSGQSRETTWTCPGLRQIPRHNVCDSKFIWSIRRMCYGA 330
LW D YP S T + S+G T+ T +P + + SI C GA
Sbjct: 737 LWANDAVYYPVSSSSTTTTSTSTGSVTTTSTTATASCTLPI-SYTSTPTTTSISGTCNGA 795
Query: 331 RKAQSGYRLRRAVLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGV 468
S Y VL + + Q G Q+G D A V
Sbjct: 796 TFDASLYVCDGTVLCPIVNGVSYQNCNGACYNPSQYGCDNGALGPV 841
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 391 IRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGLPSL-GENKP 534
++ Q +P+ Q+G G GG P A + RG+P + G N P
Sbjct: 461 LQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGP 509
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -3
Query: 429 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPR 250
R +C H + C+ K +S+++LPS + +PP + + ++ R LP R
Sbjct: 116 RNDCIFHDA--SGACHFFFKEVGNWTVSSIALPSNLANPPIDYFLDSSSTVIQRILPAIR 173
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 384 NTTMKNSTPQAISTLSLP 331
NTTMK+S QA++ ++LP
Sbjct: 226 NTTMKSSLNQALTLINLP 243
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 189 LEDGLRMWFQW 221
L DG+R+WF+W
Sbjct: 601 LTDGMRVWFEW 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,506
Number of Sequences: 5004
Number of extensions: 68045
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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