Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0618
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.052
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 1.5
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_44358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10) 29 3.4
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1) 29 4.5
SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3) 29 5.9
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 5.9
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 29 5.9
>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 35.5 bits (78), Expect = 0.052
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -3
Query: 429 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITH--PPN*PNKFTITNIVARNLPQ 256
R N +++ + ++ NTT NS P SLP+T H PPN ++ N N
Sbjct: 118 RHNSLTNTTRHNSLNNTTRHNSLPNTTRHNSLPNTTRHNSPPNTTRHNSLPNTTRHNSLH 177
Query: 255 PRTCPCSLSALTTGTTC 205
T SL TT TTC
Sbjct: 178 NTTRHNSLHN-TTRTTC 193
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 378 TMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIV-ARNLPQPRTCPCSLSALTTGTTCG 202
T+ +TPQ T + P+ TH P P+ T T+ + P P T + TT T
Sbjct: 14 TLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPAT 73
Query: 201 DRP 193
P
Sbjct: 74 PTP 76
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -3
Query: 417 TSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPRTCPC 238
T H ++A V T+ + A ++LP + T P N P T+ + A++ T C
Sbjct: 311 TIHKAVFATV-QITITDINDNAPKFVNLPYSGTVPENSPTGLTVLRVTAQDADSVCTLHC 369
Query: 237 SLSALTTGT-TC 205
L T+ TC
Sbjct: 370 ELKTSTSSVYTC 381
>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 557 VASCWPSCSSRS*DLKSHSCRSYKIFSGA 643
VAS W S R +K H C+S ++F G+
Sbjct: 563 VASVWDVVSDRRFGIKQHPCKSARVFKGS 591
>SB_44358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 414 SHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLPQPRTCP 241
+H+ + ++ NTT NS P SLP+T H PN ++TN N T
Sbjct: 14 THTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLTNTTRHNSLPNTTRH 73
Query: 240 CSLSALTTG 214
SL T G
Sbjct: 74 NSLHNSTRG 82
>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
Length = 296
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = -3
Query: 429 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLPQ 256
R N ++ + + NTT NS P SLP+T H PN ++ N N P
Sbjct: 131 RHNSLPNTARHKSPTNTTRHNSLPNITRHNSLPNTARHNSLPNTTRHNSLPNTARHNSPP 190
Query: 255 PRTCPCSLSALT 220
T SL T
Sbjct: 191 NTTRHNSLPNTT 202
>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -3
Query: 429 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLPQ 256
R N ++ + ++ NTT NS P SLP+T H PN ++ N N P
Sbjct: 19 RHNSLPNTTRHNSLHNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRYNSLPNTTRHNSPP 78
Query: 255 PRTCPCSLSALT 220
T SL T
Sbjct: 79 NTTRHNSLPNTT 90
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 429 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITH 316
R N ++ Y ++ NTT NS P SLP+T H
Sbjct: 55 RHNSLPNTTRYNSLPNTTRHNSPPNTTRHNSLPNTTRH 92
>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
Length = 271
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 687 RQLRPVAHRHQYHQDAPEKILYDLQE*DFKS*ERDEHEGQ--QDATGELQVRLRFVLSER 514
R+ R HRH+YH+ E+ Y+ DEH+GQ + AT E++ + L E+
Sbjct: 71 RRHRASPHRHKYHERHSEETGYN---------SSDEHDGQNLEVATDEMERQFEQALKEK 121
Query: 513 R 511
+
Sbjct: 122 K 122
>SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 973
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 615 ADHTRSSREHLDDIGDGGLPDEAVCSDACPRTDSSQTVP*RVVGGAI 755
+ H S + + G G + VC CP+T ++ T P +GG +
Sbjct: 495 SQHLPLSLSRVSEYGSGMTTVDGVCPPTCPQTHTTPTAP-ASIGGDV 540
>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
Length = 586
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 175 LYPHSWRTVSACGSSGQSRETTWTCPGLRQIPRHNVCDSKFIWSIR 312
L H R+ + G + S+ T PG P H+VC+S +W I+
Sbjct: 413 LVGHLDRSQTTSGPASSSQ--TAPAPGKAPAPGHSVCNSLILWYIK 456
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 145 MSYPLWRDCALYPHSWRTVSACGSSGQSRETTWTCPGLRQI 267
+ +P W CA++ H R ++ C S + W G Q+
Sbjct: 1672 LQHPDWATCAVFSHDERHIATC--SRDQKVRLWAVEGYAQV 1710
>SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 551
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 426 FSAIWH*SERYCWCWRRPELKGAVCSRAAVARREQTEDVLATRRSH 563
F A+ S+ CW W+R A S V R +DV + R H
Sbjct: 47 FGAVRWISKAPCWRWKRERRAKAKVSLRVVCRVPSVQDVRSLFRKH 92
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 381 TTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPRTCPCSLSALTTGT 211
TT +T A +T + P+T T P T T + P T P + +A TT T
Sbjct: 2 TTTAPATNTAPATTTAPTTATAPTTTTAPTTNTALTTTTAPTTTTAPTTTTAPTTTT 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,861,951
Number of Sequences: 59808
Number of extensions: 582620
Number of successful extensions: 1881
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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