Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0618
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y14949-1|CAA75173.1|  277|Caenorhabditis elegans SURF-4 protein ...    89   5e-18
U58728-5|AAB00591.1|  277|Caenorhabditis elegans Surfeit homolog...    89   5e-18
Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical pr...    52   5e-07
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    31   1.3  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    29   3.0  
U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q (ubi...    29   4.0  
AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    29   5.2  
Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.      28   6.9  
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr...    28   9.1  
Z38112-6|CAA86235.2|  870|Caenorhabditis elegans Hypothetical pr...    28   9.1  
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr...    28   9.1  
Z35637-7|CAA84690.2|  870|Caenorhabditis elegans Hypothetical pr...    28   9.1  
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.     28   9.1  

>Y14949-1|CAA75173.1|  277|Caenorhabditis elegans SURF-4 protein
           protein.
          Length = 277

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 38/91 (41%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +1

Query: 487 RAQSVRGLPSLGE-NKPKTYLQLAGRILLAFMFITLLRFEISFLQIIQDLLGSILMILVT 663
           +A    G+P++G+ NKPK+Y+ LAGR+LL FMF++L+ FE+SF+Q+++ ++G  L+ LV+
Sbjct: 145 KASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFEMSFMQVLEIVVGFALITLVS 204

Query: 664 VGYRTKXXXXXXXXXXXXXXXYHNAWWAVPS 756
           +GY+TK               + NAWW +PS
Sbjct: 205 IGYKTKLSAIVLVIWLFGLNLWLNAWWTIPS 235



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 30/57 (52%), Positives = 42/57 (73%)
 Frame = +3

Query: 87  NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWA 257
           NE ++  ED A+   RK +  LP +ARLCL+STFLEDG+RM+FQW +Q+ +M  SW+
Sbjct: 11  NEMLAKREDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWS 67



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 37/84 (44%), Positives = 47/84 (55%)
 Frame = +2

Query: 257 CGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXX 436
           CG F+AT+FVI N FGQ    +M++ R KV +ACG+L  IV+LQT AY ILWD++F    
Sbjct: 68  CGWFIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARN 127

Query: 437 XXXXXXXXXXXXXXXXXXXSLFAG 508
                              SLFAG
Sbjct: 128 IAVGGGLLLLLAETQEEKASLFAG 151



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 768 RDFLKYDFFQTLSVI 812
           RDF+KYDFFQT+SVI
Sbjct: 240 RDFMKYDFFQTMSVI 254


>U58728-5|AAB00591.1|  277|Caenorhabditis elegans Surfeit homolog
           protein 4 protein.
          Length = 277

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 38/91 (41%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +1

Query: 487 RAQSVRGLPSLGE-NKPKTYLQLAGRILLAFMFITLLRFEISFLQIIQDLLGSILMILVT 663
           +A    G+P++G+ NKPK+Y+ LAGR+LL FMF++L+ FE+SF+Q+++ ++G  L+ LV+
Sbjct: 145 KASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFEMSFMQVLEIVVGFALITLVS 204

Query: 664 VGYRTKXXXXXXXXXXXXXXXYHNAWWAVPS 756
           +GY+TK               + NAWW +PS
Sbjct: 205 IGYKTKLSAIVLVIWLFGLNLWLNAWWTIPS 235



 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 31/57 (54%), Positives = 43/57 (75%)
 Frame = +3

Query: 87  NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWA 257
           NE ++ AED A+   RK +  LP +ARLCL+STFLEDG+RM+FQW +Q+ +M  SW+
Sbjct: 11  NEMLAKAEDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWS 67



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 37/84 (44%), Positives = 47/84 (55%)
 Frame = +2

Query: 257 CGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXX 436
           CG F+AT+FVI N FGQ    +M++ R KV +ACG+L  IV+LQT AY ILWD++F    
Sbjct: 68  CGWFIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARN 127

Query: 437 XXXXXXXXXXXXXXXXXXXSLFAG 508
                              SLFAG
Sbjct: 128 IAVGGGLLLLLAETQEEKASLFAG 151



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 768 RDFLKYDFFQTLSVI 812
           RDF+KYDFFQT+SVI
Sbjct: 240 RDFMKYDFFQTMSVI 254


>Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical
           protein T02E1.7 protein.
          Length = 269

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 22/56 (39%), Positives = 34/56 (60%)
 Frame = +3

Query: 87  NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSW 254
           N  ++  ED  + + R  + VLPT+ RL LISTF+EDGLR+ F   +  ++   +W
Sbjct: 4   NVVITRCEDYTETLARNTRKVLPTIGRLLLISTFVEDGLRLLFNTHDHVNHFSYNW 59


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -3

Query: 408 SILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLPQPRTCPCS 235
           ++   ++  T    S P  + +  LP+T+T    P    + T T  +    P+P T P  
Sbjct: 112 TVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTTRKTTTTTLRPTKPRPMTKP-R 170

Query: 234 LSALTTGTTCGDRPPGMW 181
           +     G    +RP G W
Sbjct: 171 VKVCPYGWATFNRPSGKW 188


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 381 TTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPRTCPCSLSALTTGTTCG 202
           +T   ST    +T   P+T T         T T+  A   PQP T   S   +T  T   
Sbjct: 605 STTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVTLTTQTW 664

Query: 201 DRPP 190
             PP
Sbjct: 665 TAPP 668


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 381 TTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPRTCPCSLSALTTGTTCG 202
           +T   ST    +T   P+T T         T T+  A   PQP T   S   +T  T   
Sbjct: 605 STTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVTLTTQTW 664

Query: 201 DRPP 190
             PP
Sbjct: 665 TAPP 668


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 230 ERLHGHVLGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSIL 409
           +R+H H++  GK+  T FV+    G L             I    ++ +  + +F Y+ L
Sbjct: 480 KRVHPHLVNAGKYSTTFFVVA--CGALNKYYEATDPNTTSIFF-YIWILSYIMSFTYTFL 536

Query: 410 WDV 418
           WD+
Sbjct: 537 WDI 539


>U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 8 protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 287 IVNLFGQLGGCVMVLGRLKVDIACGVLF 370
           I +L  +L GC ++  +LK  ++CG LF
Sbjct: 709 IYSLHRKLSGCYLLAAKLKATVSCGGLF 736


>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -1

Query: 521 PSDGSPRTDCALQLGPPPTPAVALRSMPNCGEGTVRPIVY 402
           PS G     C     PPP PA A    P CG G   P  Y
Sbjct: 20  PSAGGGGGGCGCG-APPPPPACAPPPAPACGGGAPPPPAY 58


>Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical
           protein T01H3.1 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 147 VLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWAAANSSP 275
           +L T A L +I+T +  G  +++  S Q    D+ W   ++SP
Sbjct: 6   ILKTTATLTVITTLIILGTGLFYMLSGQGHRFDIGWFLTSTSP 48


>AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 147 VLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWAAANSSP 275
           +L T A L +I+T +  G  +++  S Q    D+ W   ++SP
Sbjct: 6   ILKTTATLTVITTLIILGTGLFYMLSGQGHRFDIGWFLTSTSP 48


>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
            E03A3.6 protein.
          Length = 2089

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 72   KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 176
            K  + N ++S   ++ D  +  G  +LPTVA+L +
Sbjct: 1295 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1329


>Z38112-6|CAA86235.2|  870|Caenorhabditis elegans Hypothetical
           protein E03A3.6b protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 72  KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 176
           K  + N ++S   ++ D  +  G  +LPTVA+L +
Sbjct: 76  KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 110


>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
            E03A3.6 protein.
          Length = 2089

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 72   KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 176
            K  + N ++S   ++ D  +  G  +LPTVA+L +
Sbjct: 1295 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1329


>Z35637-7|CAA84690.2|  870|Caenorhabditis elegans Hypothetical
           protein E03A3.6b protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 72  KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 176
           K  + N ++S   ++ D  +  G  +LPTVA+L +
Sbjct: 76  KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 110


>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
          Length = 2084

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 72   KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 176
            K  + N ++S   ++ D  +  G  +LPTVA+L +
Sbjct: 1298 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,177
Number of Sequences: 27780
Number of extensions: 413831
Number of successful extensions: 1347
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)