Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0618
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01330.1 68416.m00049 transcription factor, putative / E2F-li...    31   0.69 
At4g10740.1 68417.m01754 F-box family protein contains Pfam PF00...    29   2.8  
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla...    29   3.7  
At5g06250.1 68418.m00698 DNA-binding protein, putative similar t...    28   6.4  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    28   6.4  
At1g28040.1 68414.m03433 zinc finger (C3HC4-type RING finger) fa...    28   6.4  
At4g15980.1 68417.m02426 pectinesterase family protein contains ...    28   8.5  
At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative / phos...    28   8.5  

>At3g01330.1 68416.m00049 transcription factor, putative / E2F-like
           repressor E2L2 (E2L2) identical to E2F-like repressor
           E2L2 [Arabidopsis thaliana] GI:20502506
          Length = 354

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 662 VTNIIKMLPRRSCMICRNEISNLKSVMNMKASRMRPASCKYVFGLFSPSDGS 507
           +TN+     +  C   R +I   K          +PA+ KYVFG FSP   S
Sbjct: 250 ITNLRAKRNKTYCSSIRKQIGYKKHDEENTEQESKPAASKYVFGPFSPIGAS 301


>At4g10740.1 68417.m01754 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 427

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 130 YEKAKMSYPLWRDCALYPHSWRTVSACGSSGQSRETTW 243
           YE       LW    + PH WR +S CG    +  T W
Sbjct: 188 YETYDFDTDLWTTLDVSPH-WRIISRCGGVSLNGNTYW 224


>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
           putative / O-succinylhomoserine (Thiol)-lyase, putative
           strong similarity to SP|P55217 Cystathionine
           gamma-synthase, chloroplast precursor (EC 4.2.99.9)
           (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
           thaliana}; contains Pfam profile PF01053: Cys/Met
           metabolism PLP-dependent enzyme
          Length = 412

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 262 QIPRHNVCDSKFIW---SIRRMCYGARKAQSGYRLRRAVLHSCITDIRVQYT 408
           QI + N  + +F+     + R+C G    Q G RLRR +  S IT + V  T
Sbjct: 2   QILKENASNQRFVTRESEVNRICCGFNGFQLGERLRRDMKTSSITTLVVNTT 53


>At5g06250.1 68418.m00698 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 282

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 121 SATSSAVDTYSLGICIFHAEHSTNTEKRNLTESE 20
           +AT+SAV+T S+G   +H  H+T+      + SE
Sbjct: 167 AATNSAVNTSSMGALSYHQIHATSNYSNPPSHSE 200


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -1

Query: 755 DGTAHHALWYSLRTVSTRTSIRADSFVR*PTVTNIIKMLPRRSCMICRNEISNLKSVMNM 576
           +G   H L  SL+  S   S+    F R  +VT ++    RRS  IC N    + SV   
Sbjct: 108 EGQCRHRL--SLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMI-SVRCR 164

Query: 575 KASRMRPASCKYVFGL 528
             +R++   C  +  L
Sbjct: 165 NLTRLKLRGCPEISDL 180


>At1g28040.1 68414.m03433 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 336

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 611 NEISNLKSVMNMKASRMRPASCKYVFGLFSPSD 513
           N  S+  +  N+  S++ P SC+ V GL+ P D
Sbjct: 127 NSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVD 159


>At4g15980.1 68417.m02426 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 701

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 609 IPADHTRSSREHLDDIGDGGLPDEAVCS--DACPRTDSSQTVP 731
           IP    RS R  L  +G G   DE+V S  D+ P  DSS   P
Sbjct: 208 IPFPFLRSRRGRLGILGSGSSRDESVGSSQDSPPNEDSSDDSP 250


>At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           SP:P24859 from [Kluyveromyces lactissimilar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
           CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
           N-terminus
          Length = 608

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 608 EISNLKSVMNMKASRMRPASCKYVFGLFSPSDGSPRTDCALQLGPPPTPAVALRSMPNCG 429
           E+++ K+  N    ++ P S +Y  G  SP+  S   +C   +      A  L+ MPN  
Sbjct: 387 EMASPKTNTNNHVPKLTPVS-EYANGNISPTVLSEYEECVPMVDKVVDVAWQLQEMPNAS 445

Query: 428 EG 423
           EG
Sbjct: 446 EG 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,169
Number of Sequences: 28952
Number of extensions: 379835
Number of successful extensions: 1253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)