Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0617
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 73   AESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 189
            AE    GP T+   E   ++++V+      R+E + DIL
Sbjct: 991  AEEVPGGPPTSIRVETNDQHSLVVYWKPPAREEWNGDIL 1029


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 331 YLVANTGWPVLPSM**LDSLKSPTLGCG 248
           YL+  T W V+ +   + S K  T+G G
Sbjct: 47  YLILLTTWTVISASTRIKSFKFLTIGVG 74


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 237 FPDHVSGVTNYNRSVPKY 184
           FP H S + N N  + KY
Sbjct: 196 FPRHASDLDNCNHLMTKY 213


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 363 RHHVLNWMMFGQNGAEIVFNPSATIAGEGGS 455
           RHH+++    G+  AE    P+   AG+  +
Sbjct: 259 RHHLVHHKCGGEEEAERAPAPAVRAAGDAAA 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,006
Number of Sequences: 336
Number of extensions: 3360
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)