Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0617
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 142 2e-34
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 46 2e-05
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 40 0.002
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 38 0.010
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 36 0.032
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 32 0.39
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 1.6
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 30 2.1
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89... 29 3.6
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 3.6
04_01_0376 - 4929447-4929731 29 4.8
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 28 6.3
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 28 6.3
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 142 bits (345), Expect = 2e-34
Identities = 66/84 (78%), Positives = 70/84 (83%)
Frame = +3
Query: 255 PRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSAT 434
PRVGDFNES YYMEGNTGHPVF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSAT
Sbjct: 227 PRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSAT 286
Query: 435 IAGEGGSEYMWNVEARNAAITNCY 506
+ GE SE MW +EARNAAI N Y
Sbjct: 287 V-GE-LSEPMWPIEARNAAIANSY 308
Score = 119 bits (286), Expect = 3e-27
Identities = 56/81 (69%), Positives = 64/81 (79%)
Frame = +1
Query: 13 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 192
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 193 NTAVVISDTGNVIGKHRKNHI 255
NTAVVI + GN+IG HRKNHI
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHI 226
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/65 (64%), Positives = 47/65 (72%)
Frame = +2
Query: 515 AINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVKCPGLSRTRDGLLIAAVDL 694
+INRVG E FPN FTS DGKP H D G FYGSS+F PD P LSR RDGL+I+ +DL
Sbjct: 312 SINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDL 371
Query: 695 NLNRQ 709
NL RQ
Sbjct: 372 NLCRQ 376
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 174
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 175 HSDILWNTAVVISDTGNVIGKHRKNHIRE 261
S L+NT VI G + KHRK H+ E
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFE 97
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 ICFQELWNMPFAFCTREKQPWCEFAESAEDG----PTTTFLRELAIKYAMVIVSSILERD 168
+ E+WN P++ + E+AE E G P+ + + E+A + +V +
Sbjct: 81 VLLPEIWNGPYS-----NDSFPEYAEDIEAGGDAAPSFSMMSEVARSLQITLVGGSIS-- 133
Query: 169 EKHSDILWNTAVVISDTGNVIGKHRKNHI 255
E+ + L+NT V G + GKHRK H+
Sbjct: 134 ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 270 FNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 431
+ E Y+ G+TG F T+Y I V IC+ + GAEI+F P+A
Sbjct: 132 YQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA 185
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/85 (25%), Positives = 44/85 (51%)
Frame = +1
Query: 1 ICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHS 180
+ QEL+ + FC ++ + + A+ + PT ++LA + +VI S E + +
Sbjct: 46 VLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEVVIPVSFFE---EAN 101
Query: 181 DILWNTAVVISDTGNVIGKHRKNHI 255
+ +N+ +I G +G +RK+HI
Sbjct: 102 NAHYNSVAIIDADGTDLGLYRKSHI 126
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 91 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 246
GP T L LA KY + +V ++ER L+NT + G +GKHRK
Sbjct: 110 GPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK 158
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 91 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 246
GP T L +A KY + +V ++ER+ L+ + + G +GKHRK
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK 162
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/88 (21%), Positives = 35/88 (39%)
Frame = +1
Query: 16 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 195
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 196 TAVVISDTGNVIGKHRKNHIRESAILTN 279
+ TGNV + R A T+
Sbjct: 824 ETASFTATGNVFSQIMSRDDRSRAPRTS 851
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 145 VSSILERDEKHSDILWNTA---VVISDTGNVIGKHRKNHIRESAILTNPTTTW-----KV 300
+SS LE+++ + L N A VV+S+ G V+G N + + TNP T K+
Sbjct: 529 MSSHLEQNDDTQETLQNIASFQVVMSERGKVVGFQPTNRLAVNHWATNPLTKLLYEGRKI 588
Query: 301 TPAIL 315
+PA L
Sbjct: 589 SPAFL 593
>12_01_0117 +
893924-893971,894944-895003,895024-895174,895410-895884,
895974-896316,896347-896391,896533-896631,896708-896828,
897032-897255
Length = 521
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 338 LAVSGRKYRMAGVTFHVVVGFVKIADSRMWFLRCFPITFPVSLITTAVFQSMSECFSSLS 159
LAV Y + VT HV+ G+ K SR W + + + +S+I ++ S LS
Sbjct: 385 LAVRNAWYDPSKVTDHVIQGYTKPLRSRGWEMAL--LEYTISMIMDSISSSKVPVSERLS 442
Query: 158 NIEDTITI 135
I + +
Sbjct: 443 EISCPVLV 450
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 338 LAVSGRKYRMAGVTFHVVVGFVKIADSRMWFLRCFPITFPVSLITTAVFQSMSECFSSLS 159
LAV Y + VT HV+ G+ K SR W + + + +S+I ++ S LS
Sbjct: 344 LAVRNAWYDPSKVTDHVIQGYTKPLRSRGWEMAL--LEYTISMIMDSISSSKVPVSERLS 401
Query: 158 NIEDTITI 135
I + +
Sbjct: 402 EISCPVLV 409
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 342 RSCRIWSQIQDGRCYLPCSSW 280
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 234 ETSQEPHPRVGDFNESNYY 290
+TS+EP PR FN++++Y
Sbjct: 261 QTSREPTPRASSFNQADFY 279
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 395 SEHHPVQDVVPSE-ADVHRDLAVSGRKYRMAGVTFHVVV 282
+E HP+ DV+PSE +V D + R MAG H +V
Sbjct: 282 AEVHPIDDVMPSEVVEVKVDDEETNRTDEMAGDGDHAMV 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,873,415
Number of Sequences: 37544
Number of extensions: 435981
Number of successful extensions: 1239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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