Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0617
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 36   0.024
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          36   0.043
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)                 33   0.17 
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   2.1  
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  28   8.5  

>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 647 GLSRTRDGLLIAAVDLNLNRQ 709
           GLSRTRDGLL+  VDLNL RQ
Sbjct: 41  GLSRTRDGLLVTEVDLNLCRQ 61


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +1

Query: 70  FAESAED--GPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 240
           F + AE+  G ++  L E+A +    IV  SI ER       L+NT++    +GN++GKH
Sbjct: 56  FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGNLMGKH 113

Query: 241 RKNHI 255
           RK H+
Sbjct: 114 RKIHL 118


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +1

Query: 70  FAESAED--GPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 240
           F + AE+  G ++  L E+A +    IV  SI ER       L+NT++    +GN++GKH
Sbjct: 12  FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 69

Query: 241 RKNHI 255
           RK H+
Sbjct: 70  RKIHL 74


>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
          Length = 320

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -3

Query: 416 DDLRSVLSEHHPVQDVVPSEADVHRDL 336
           DD+R  LS+H P +DVV  EADV + L
Sbjct: 266 DDVREELSQHVPQEDVVIKEADVKKQL 292


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +1

Query: 70  FAESAED--GPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 240
           F + AE+  G ++  L E+A +    IV  SI ER       L+NT++    +GN++GKH
Sbjct: 58  FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 115

Query: 241 RK 246
           RK
Sbjct: 116 RK 117


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 180 RMLLVPF*YRGHDHHCVLDGEFPKE 106
           R L+ PF +R +DH  V+D  FPK+
Sbjct: 74  RKLIKPFYFRQYDHGSVVDAIFPKD 98


>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 85  EDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 189
           +D     FLR++ IK      SS++++  KH D+L
Sbjct: 657 DDEDKLLFLRDIMIKLHRSKASSVMDQPGKHEDVL 691


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,375,628
Number of Sequences: 59808
Number of extensions: 484783
Number of successful extensions: 1303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)