Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0617
         (709 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    24   4.1  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   5.4  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   5.4  

>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 164 LSNIEDTITIAYLMASSRRKVVVGPSSADSANSHHGCFSL 45
           L   E+     Y + +  +  ++GP+++ SA    GC S+
Sbjct: 238 LKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSV 277


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 678  INKPSLVRDRPGHLTPSGPQK 616
            I  P L +DR  H TPS PQ+
Sbjct: 1780 IKLPILRKDRLIHSTPSSPQE 1800


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 378  NWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEA 479
            +W   G+  +  V  PS      GG+EYM NV A
Sbjct: 1113 SWAGMGKQESHYVMYPSNVPVFAGGAEYM-NVPA 1145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,757
Number of Sequences: 2352
Number of extensions: 14831
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)