Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0617
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   130   1e-30
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    28   5.7  
U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoy...    28   7.5  
U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoy...    28   7.5  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    27   9.9  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    27   9.9  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      27   9.9  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  130 bits (313), Expect = 1e-30
 Identities = 59/96 (61%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
 Frame = +3

Query: 216 HRKRDRETSQEPH-PRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMF 392
           H  R    S++ H PRVGDFNES YYME   GHPVF T+YG+I +NIC+GRHH  NWMM+
Sbjct: 188 HTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMY 247

Query: 393 GQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITN 500
             NGAEI+FNPSAT+     SE +W +EARNAAI N
Sbjct: 248 ALNGAEIIFNPSATVGAL--SEPLWGIEARNAAIAN 281



 Score =  128 bits (309), Expect = 4e-30
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   ICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHS 180
           I  QE W MPFAFCTRE+ PW EFAES   GPTT FL +LA+K+ +VI+S ILERDE+  
Sbjct: 117 IGLQEAWTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKD 176

Query: 181 DILWNTAVVISDTGNVIGKHRKNHI 255
           D++WNTAVVIS TG VIG+ RKNHI
Sbjct: 177 DVIWNTAVVISHTGRVIGRSRKNHI 201



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 45/69 (65%), Positives = 52/69 (75%)
 Frame = +2

Query: 503 LLTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVKCPGLSRTRDGLLIA 682
           + T  INRVG E FPNEFTS +G+PAHKD G FYGSSY   PDG + P LSR R+G+LIA
Sbjct: 283 VFTVGINRVGTEVFPNEFTSGNGQPAHKDFGHFYGSSYIAAPDGSRTPALSRVREGVLIA 342

Query: 683 AVDLNLNRQ 709
            +DLNL RQ
Sbjct: 343 ELDLNLCRQ 351


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 242 RCFPITFPVSLITTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 96
           +C P+TF ++   T +       F+++  IE+T I IA L+  +   V++
Sbjct: 75  KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124


>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -3

Query: 479 SFNVPHVLAAAFSGDRR*RIEDDLRSVLSEHHPVQDVVPSEADVHRDLAVSGRKYRMAGV 300
           SFNV  +    + G++R +   ++   + +H  +QD+ P+   + RD  +     ++AG+
Sbjct: 21  SFNVDKLTEYYYGGEKRLKARREVEKCVEDHKELQDLKPTPF-MSRDELIDNSVRKLAGM 79


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 157 LERDEKHSDILWNTAVVISDTGNVIGKHRKNHIRESAILTNPTTTW 294
           LE D   +++L + AV + +    +GK   + +RE+ + T P TTW
Sbjct: 437 LEDDTIDAEVLNSLAVTMENFRFAMGKSSPSALREAVVET-PNTTW 481


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 157 LERDEKHSDILWNTAVVISDTGNVIGKHRKNHIRESAILTNPTTTW 294
           LE D   +++L + AV + +    +GK   + +RE+ + T P TTW
Sbjct: 437 LEDDTIDAEVLNSLAVTMENFRFAMGKSSPSALREAVVET-PNTTW 481


>U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform b protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 392 EHHPVQDVVPSEADVHRDLAVSGRKY-RMAGVTFHVVVGFVKIAD 261
           + HPV +   ++  + +D+++ G KY  MA   F   +G  +I D
Sbjct: 39  QDHPVLNPKYADGKMTKDVSIDGEKYLNMASTNFLSFIGVKRIED 83


>U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform a protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 392 EHHPVQDVVPSEADVHRDLAVSGRKY-RMAGVTFHVVVGFVKIAD 261
           + HPV +   ++  + +D+++ G KY  MA   F   +G  +I D
Sbjct: 63  QDHPVLNPKYADGKMTKDVSIDGEKYLNMASTNFLSFIGVKRIED 107


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 581 HKDLGLFYGSSYF--CGPDGVKCPGLSRTRDGLLIAAVDLNLNR 706
           H++  L  GSS    C   G   PG+S  RDGL I   D  +++
Sbjct: 431 HQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQ 474


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 581 HKDLGLFYGSSYF--CGPDGVKCPGLSRTRDGLLIAAVDLNLNR 706
           H++  L  GSS    C   G   PG+S  RDGL I   D  +++
Sbjct: 431 HQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQ 474


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 581 HKDLGLFYGSSYF--CGPDGVKCPGLSRTRDGLLIAAVDLNLNR 706
           H++  L  GSS    C   G   PG+S  RDGL I   D  +++
Sbjct: 431 HQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQ 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,864
Number of Sequences: 27780
Number of extensions: 345089
Number of successful extensions: 1014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)