Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0616
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    26   2.6  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   4.5  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   7.9  

>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 471 HYIN--SFPYLLFIMITYLSFIYNRSTYNQ 388
           ++IN  SF +L+F ++ Y+S +Y    YN+
Sbjct: 8   YFINILSFGFLIFTVLLYISSVYVLPRYNE 37


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 465 INSFPYLLFIMITYLSFIYNRSTYNQSNEFAECEPNFLILKF 340
           I+++   +++  +Y+ F    S  + +    +CEPNFL+  F
Sbjct: 376 IDTYSPFIYLDSSYVPFSSGSSLSHVALHHYDCEPNFLMRAF 417


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 369 CEPNFLILKFEMN*RDDELS 310
           C PNFL LK+  +  DD+L+
Sbjct: 152 CSPNFLTLKWNSSLFDDDLA 171


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 312 KVHHHVNSFQISISKNLVHIRQI 380
           ++HH VN+  +SI   L HI  +
Sbjct: 704 RLHHEVNNNNMSIQNALAHISSL 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,293
Number of Sequences: 5004
Number of extensions: 35110
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)