Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0616
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48621-1|CAA88540.2|  179|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    27   7.0  

>Z48621-1|CAA88540.2|  179|Caenorhabditis elegans Hypothetical
           protein R07B1.2 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +2

Query: 155 DGEWSPSLIEFQIFKKKDYF----YAHQSYFRI 241
           +GEW P L      K+ D F    Y H+ Y+ I
Sbjct: 70  NGEWGPQLRHSHFLKRHDPFHVRIYVHEGYYNI 102


>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 322 ITLIHFKFQYQKIWFTFGKFIALVVC 399
           +T I F +QY+  W  +   + LVVC
Sbjct: 125 LTSILFPYQYENFWSRWNLLVFLVVC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,246,009
Number of Sequences: 27780
Number of extensions: 192344
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)