Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0616
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s...    30   0.93 
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi...    27   8.7  

>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
           similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
           profile PF00241: Cofilin/tropomyosin-type actin-binding
           protein
          Length = 133

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 195 LKKKIIFMHTKAIFELSLNNVFIILYVINFTDI*LDFIKK 314
           ++KK+I+  TK  F+  L+ + +  +  + TDI LD I++
Sbjct: 91  MRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRR 130


>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
           protein low similarity to prediabetic NOD sera-reactive
           autoantigen [Mus musculus] GI:6670773,
           anaphase-promoting complex subunit 7 [Homo sapiens]
           GI:6180015; contains Pfam profile PF00515: TPR Domain
          Length = 558

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 154 RCAVRSSAYKGYIYLFIKVLNR 89
           +C V S AYKG + LF ++L R
Sbjct: 220 QCCVASHAYKGALELFAELLQR 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,203,341
Number of Sequences: 28952
Number of extensions: 163895
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)