Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0615
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724...    39   0.004
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    37   0.016
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122...    36   0.027

>06_03_0975 -
           26471438-26472109,26472189-26472284,26472372-26472482,
           26472494-26472530,26472566-26472576,26472674-26473050,
           26474310-26474895
          Length = 629

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 12  PVTLEIIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           P   +++    V  TPHLGAST EAQ  V  EIAE ++  +K
Sbjct: 349 PKDSKLVHHEHVTVTPHLGASTSEAQEGVALEIAEAVLGALK 390


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +3

Query: 24  EIIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           +++    V  TPHLGAST EAQ  V  EIAE ++  +K
Sbjct: 337 KLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVIGALK 374


>08_02_0846 -
           21811156-21811833,21811960-21812055,21812157-21812267,
           21812367-21812743,21814699-21814734,21815236-21815839
          Length = 633

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +3

Query: 24  EIIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           +++    V  TPHLGAST EAQ  V  EIAE +V  ++
Sbjct: 355 KLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVVGALR 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,320,292
Number of Sequences: 37544
Number of extensions: 189451
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)