SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0615
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.                48   4e-05
BC032110-1|AAH32110.3|  322|Homo sapiens PHGDH protein protein.        48   4e-05
BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate dehydr...    48   4e-05
BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate dehydr...    48   4e-05
BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate dehydr...    48   4e-05
AL589734-3|CAI22409.1|  499|Homo sapiens phosphoglycerate dehydr...    48   4e-05
AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate dehydr...    48   4e-05
AL139251-2|CAI22213.1|  499|Homo sapiens phosphoglycerate dehydr...    48   4e-05
AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate dehydr...    48   4e-05
AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate dehy...    48   4e-05
AF171236-1|AAD51414.1|  405|Homo sapiens 3-phosphoglycerate dehy...    48   4e-05
AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate dehy...    48   4e-05

>CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>BC032110-1|AAH32110.3|  322|Homo sapiens PHGDH protein protein.
          Length = 322

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 61  LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 97


>BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>AL589734-3|CAI22409.1|  499|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 499

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 238 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 274


>AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>AL139251-2|CAI22213.1|  499|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 499

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 238 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 274


>AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


>AF171236-1|AAD51414.1|  405|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 405

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 144 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 180


>AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           ++    VI+ PHLGASTKEAQ R G+EIA Q V++VK
Sbjct: 272 LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 308


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,368,948
Number of Sequences: 237096
Number of extensions: 1135962
Number of successful extensions: 2663
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2663
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -