Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0615
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-...    42   6e-04
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    39   0.003
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    39   0.004

>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
           3-PGDH identical to SP|O04130
          Length = 624

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/37 (56%), Positives = 24/37 (64%)
 Frame = +3

Query: 27  IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           +IQ   V  TPHLGASTKEAQ  V  EIAE +   +K
Sbjct: 349 LIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALK 385


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 24  EIIQQPAVIATPHLGASTKEAQVRVGQEIAEQLV 125
           +++Q   V  TPHLGAST EAQ  V  EIAE +V
Sbjct: 327 KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 360


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +3

Query: 24  EIIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVNLVK 137
           +++   +V ATPHLGAST EAQ  V  E+AE ++  ++
Sbjct: 312 KLVLHESVTATPHLGASTMEAQEGVSIEVAEAVIGALR 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,687
Number of Sequences: 28952
Number of extensions: 157964
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)