Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0614
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 41 2e-04
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 29 0.51
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 2.1
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 27 2.7
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 27 3.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.8
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 26 4.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 4.8
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 26 6.3
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 6.3
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 25 8.4
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 8.4
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 66 IDFEYCAYNHRGFDIANHFQEWAYDYTNDAHPFYHECRDDCPTLEQKEIFIKEYLK 233
+DFEY N FD+AN+F EW DY + H + + R P +++ Y++
Sbjct: 272 VDFEYAGPNLCAFDLANYFAEWMADYHHPTHNYLMD-RSRYPDFNARKLVYHAYVE 326
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.51
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 72 FEYCAYNHRGFDIANHFQEW 131
F C Y H F++ NHF+++
Sbjct: 61 FRICGYRHHAFELKNHFEKY 80
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 342 RSGPLSMLPRVRYPSDTGNTRCRGSKRT 425
+SG L P V + SD N+ CR SK T
Sbjct: 65 KSGILKNKPIVHFMSDISNSACRASKIT 92
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 112 AMSKPLWL*AQYSKSMRKSFGS--PLSEMWLEMLSDE 8
A+S P WL A SK RKS S PL + W++ LS +
Sbjct: 270 ALSIPWWLPAVASKEHRKSLSSFIPLPK-WMKTLSPQ 305
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 212 IHKGVLKTLFVERLQEPQEPSIDDVNHLLNEVEAFALASHLF 337
I L ++F L+ + PS DD+NHL++ V A S F
Sbjct: 202 IDNEALSSIFANTLKI-KSPSYDDLNHLVSAVMAGVTTSFRF 242
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +2
Query: 14 RQHLQPHLGQRRAEALPHRLRVLRLQPQGLRHSEPLPGMGLRLHERRASVLPRVPGR 184
R +QP + + P R + + PQ +PGM + +R + P P R
Sbjct: 621 RTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQR 677
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +2
Query: 14 RQHLQPHLGQRRAEALPHRLRVLRLQPQGLRHSEPLPGMGLRLHERRASVLPRVPGR 184
R +QP + + P R + + PQ +PGM + +R + P P R
Sbjct: 687 RTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQR 743
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 14 RQHLQPHLGQRRAEALPHRLRVLRLQPQGLRHSEPLPGMGLRLHERRASVLPRVPGR 184
R +QP + + P R + + PQ +PGM + +R + P +P R
Sbjct: 544 RTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQR 600
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 492 SHIFRFWGRPQLSFFMTSILRRWYVSNLDSAYSQYPKGI 376
SH+ F L F + I + +Y SNLD Y + K +
Sbjct: 392 SHMGFFGDHSTLLFQLQPIHQVYYASNLDKNYCMFDKNV 430
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 194 LGAKGNIHKGVLKTLFVERLQEPQEPSIDDVNHLLNEVE 310
+GA + + V + F+E+L P S+ +HL N +E
Sbjct: 989 IGASAYVMEQVPDSWFLEKLPCPLTQSLQSFSHLSNHIE 1027
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 371 SQIPFGYWEYALSRFETYQRLKIEVIKKDNC-GLPQKRKICEVDI 502
SQIP + +F+ ++ V+ KDNC LP + I E ++
Sbjct: 31 SQIPCNINYFLEQKFQVPVDIRALVLDKDNCITLPNETTIAEAEL 75
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 315 SPSPATCSGRSGPLSMLPRVRYPSDTGNTRCRGSKRTNVSRLRS*RRTTAVCPRNEKYAR 494
SP+P++ +G +S P + + TG + G + VSR+R + YA
Sbjct: 276 SPTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKPLVSRVR------------DNYAN 323
Query: 495 STYESIP 515
++YES P
Sbjct: 324 TSYESWP 330
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 424 VRFEPRQRVFPVSEGYLTLGSIDNGPERPEQVAGEGERFHLVQQMINVIYARL 266
VR PR R+ P+ G + +G P QV G G + ++ + YA +
Sbjct: 312 VRRRPRVRLEPLISGGGQERGLRSGTLAPSQVVGFGTAARICKEEMKYDYAHI 364
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 170 RVPGRLPDLGAKGNIHKGVLKTLFVERLQEPQEPSIDDVNHLLNEVEAFALASHLFWTLW 349
R+P + D+ K +G++ T + + S++ +N L + ++A + + W LW
Sbjct: 312 RIPEKTLDI--KSPFEQGIVDTFKANYRRYWLQYSLNQINILRDPLKAVNVLKAIRWMLW 369
Query: 350 S 352
S
Sbjct: 370 S 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,767
Number of Sequences: 5004
Number of extensions: 64396
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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