Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0614
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   3e-14
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)                 28   6.7  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         28   6.7  
SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)                  28   6.7  
SB_516| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_11775| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.33)          28   8.9  
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)                 28   8.9  
SB_36008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 30/58 (51%), Positives = 42/58 (72%)
 Frame = +3

Query: 57  LFLIDFEYCAYNHRGFDIANHFQEWAYDYTNDAHPFYHECRDDCPTLEQKEIFIKEYL 230
           L  ID+EYC YN+RGFD+ANHF EW +DY ++  P+Y    +  P+LEQ+ +FI+ YL
Sbjct: 246 LLFIDYEYCGYNYRGFDLANHFNEWMWDYKHEEAPYYLYNPELFPSLEQQLLFIRTYL 303



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = +2

Query: 293 LLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFETYQRLK 436
           LL+EV+ FAL S+ FW +WS+V A  S I FGY EYA +RF++Y+R K
Sbjct: 322 LLDEVQRFALVSNFFWGMWSVVQAKMSNIEFGYLEYAFTRFDSYRRQK 369


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 326  WRGRTLPPRSTDD*RHLCSAPVAPGD 249
            WR +       DD RH  S+P+ PGD
Sbjct: 1838 WRNKLSQKNYADDKRHAVSSPIVPGD 1863


>SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)
          Length = 337

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 90  NHRGFDIANHFQEWAYDYTNDAHPFYHECRDDCPTLEQKEIFIKEYLKHYSSNVSRSH 263
           N    DIA  + EW +D   DA+  YH  R++ P         +EY +   + V+R+H
Sbjct: 179 NQYNNDIAK-YGEWLWDV--DANNEYHSLRENVPPPPYGHCLWEEYARDPIAWVARNH 233


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +3

Query: 87  YNHRGFDIANHFQEWAYDYTNDAHPFYHECRDDCPTLEQKEIFIKEYLKHYSSNVSRSH 263
           Y++  +D  ++  +  +D  ND +  Y+ECR   P  +     +    K  S+N   S+
Sbjct: 22  YSYSDYDYFDNSDDDYFDDYNDGYLDYYECRSSSPPPKALPTLVDSCCKILSANFPISY 80


>SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 87  YNHR-GFDIANHFQEWAYDYTNDAHPFYHECRDD 185
           YNH  GFD  ++  E  +DY +D   + HEC  D
Sbjct: 39  YNHECGFDYNDYNHECGFDYNDD---YNHECGFD 69


>SB_516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 680 NSHHFLTAI*RSVFATPPILLKTPPPSW 597
           NS +F+ ++  S     P++L+ PPP W
Sbjct: 2   NSTYFINSVSNSCSPGDPLVLERPPPRW 29


>SB_11775| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.33)
          Length = 666

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 495 STYESIPTDWGRAAVGLNR*MALLHKKFGLMSPY 596
           S YES+   W RA +G+N     L +K  L  PY
Sbjct: 532 SDYESLLRTWDRAVMGMNTQCESLGRKRCLRVPY 565


>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
          Length = 433

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 38  GQRRAEALPHRLRVLRLQPQGLRHSEPLPGMGLRLHERRASVLPR--VPGRLPDLGAKGN 211
           G  R  +  H +R +R + +  RH + LP +G++  + R  V+PR  + GR     A   
Sbjct: 86  GGLRCASRSHAMRSMRTRRRA-RHWDRLPIVGVKRDKERCLVVPRPAIGGRTRQGHANNT 144

Query: 212 IHKGVLKTLFVERLQ 256
           +   V + L V RL+
Sbjct: 145 VVNNVGRNL-VSRLK 158


>SB_36008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 582 VRTFYVTTPSIDLIRQLHGPSQLGYSHMSTSHIFRFW--GRPQLS 454
           +R + +T PS+     LH  +     H ST HI R W   RP +S
Sbjct: 29  IRPWIITRPSVSDPGSLHDQAYQTLDHYSTKHI-RLWIITRPSVS 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,431,309
Number of Sequences: 59808
Number of extensions: 492884
Number of successful extensions: 2949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2944
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)