Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0614
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 381  PSDTGNTRCRGSK 419
            PSD  NTR +GSK
Sbjct: 1448 PSDMLNTRTKGSK 1460


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 499 VDLAYFSFLGQTAVVLLYDLNLETLVR 419
           VD+A    L     + ++DL  +TL+R
Sbjct: 267 VDIAKGGKLACPPAIFIFDLTTDTLIR 293


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 378 YPSDTGNTRCRGSKRTNVSRLRS*RRTTAVCPRNEKYARSTYESIP 515
           Y +   N++ + S  +++SR  +   ++  C R      S+ E++P
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 378 YPSDTGNTRCRGSKRTNVSRLRS*RRTTAVCPRNEKYARSTYESIP 515
           Y +   N++ + S  +++SR  +   ++  C R      S+ E++P
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,523
Number of Sequences: 438
Number of extensions: 4424
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)