Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0612
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 40 0.003
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 39 0.005
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 33 0.32
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10) 29 3.0
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 3.9
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 28 6.9
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 28 6.9
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 28 9.1
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +1
Query: 511 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYME 675
A ++ SI ER L+NT++ +GN++GKHRK H +P F ES
Sbjct: 80 AYIVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSP 137
Query: 676 GNTGHPVFATRYGKIAVNIC 735
G + T Y KI + IC
Sbjct: 138 GE-NLTILDTEYCKIGIGIC 156
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 38.7 bits (86), Expect = 0.005
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +1
Query: 511 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYME 675
A ++ SI ER L+NT++ +GN++GKHRK H +P F ES
Sbjct: 36 AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSP 93
Query: 676 GNTGHPVFATRYGKIAVNIC 735
G + T Y KI + IC
Sbjct: 94 GE-NLTILDTEYCKIGIGIC 112
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2
Query: 556 NASRPFLISRTRSPLRLDGEFPKEGRGRPVFS*FGKLAPRLLLPC 422
N+++ F + RS +R DGE K GR FS KLA +L C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426
>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1101
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 453 PNQLKTGRPRPSFGNSPSRRNGDRVLDIRKGREAFGHTLEHCGC 584
P++ K RP G+SP+R V + KGRE H +E C
Sbjct: 107 PSKHKKLRPIEQNGSSPARHRPANVWNYPKGREKLKHLVEQPPC 150
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 157 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL*GRNSSAFHRGAHRSSSQRAKE 318
K PR R S+SP SRP+ + P PR RG+ RS S +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRT--PEDRRRSRGSRRSPSPPKRE 1098
>SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = -2
Query: 733 RCSPRSCRIWSQIQDGRCYLPCSSW-----IR*NRRLSEC-GSCDVSRSRFR 596
RC+P++C++ + RC L C + R R +C G CD++ + R
Sbjct: 31 RCNPQNCQVGQWVPWSRCNLACGDYGTQRRTRSKTRSEKCGGKCDLALIQVR 82
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 160 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 243
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +1
Query: 571 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 720
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 52 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 108
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 511 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 624
A ++ SI ER L+NT++ +GN++GKHRK
Sbjct: 82 AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117
>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
Length = 326
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +1
Query: 571 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 720
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 199
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 409 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 299
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 242 PENCEVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 376
P N V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971 PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 547 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 675
+K D LW A + D KH++N I R +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 248 NCEVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELW 400
N ++ + H VP+ N + A K+ ++ VA Q +++C E W
Sbjct: 112 NSDISSINHPAVVPSLLVSNTRSLA--PKISELQCVASQNSADVVCITETW 160
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 580 VVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNI 732
+ +S T + G+H + R +ES Y++ GH FAT+ + + I
Sbjct: 490 LTVSYTPRIHGEHEITILARGQHVDESPYHVHVKKGHMNFATKNTPVCLRI 540
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,191,930
Number of Sequences: 59808
Number of extensions: 523704
Number of successful extensions: 1539
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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