Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0611
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.9  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   3.8  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   6.6  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   6.6  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   6.6  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   8.8  

>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 153 LGTNIQIISVESKINNHLFCTFMISYYLCGLNVAYEF*LTLRHF 22
           L T  ++I  ++ +    FCTF + +Y     V      TL HF
Sbjct: 163 LPTRAELILFDNVLGKAFFCTFQLLFYAFRPLVVRRLPFTLMHF 206


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 355 STTKNTNIQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK 489
           S  K  N++GKQ+LL  +  ++ E        H+  +  LLS ++
Sbjct: 231 SAKKLLNVEGKQKLLASEFLKLGERPGGFFRTHLITLYELLSEVR 275


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 322 NTAKSVIKKIPSTTKNTN--IQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK*E 495
           +TA + +   P T+KN    ++ +   +RK+   + E ++KN+    ++MT+ +  ++  
Sbjct: 107 STAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQKNIQNAQKSMTSAVEGVQKH 166

Query: 496 IKN 504
            +N
Sbjct: 167 YEN 169


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 246 SFWNYLFEAMSEACNSNAEDSRTVCKYGEKCYQKNPEHHKKYKH 377
           + WN L E  SE      E    V  Y ++  ++NP + +K +H
Sbjct: 9   ALWNVLHEEESEGYPDLTELIAEVESYQQRYPKQNPTNSQKIRH 52


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 623 SDHSVLKELFLVKMPSDFYKFFDCLNTDDAIVKI 724
           +D  +L  +    + S +Y+F++C  T DA +++
Sbjct: 881 ADDKLLLPVSWYNLGSSYYRFYECDTTKDATLQV 914


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 563 QSLLLYCSLMYQIH-FLIRFRFFISYFMLLSRFVIARIWIKTFFSELSGILLIFFLKSS 390
           +++LL C L+  I     R+ F +S  ++L  FV+  IW+    S   G     F+KS+
Sbjct: 183 EAILLVCVLLNFIPPKWFRYIFRVSVAVILLDFVLNMIWLPIAVSTKYGFRDEAFMKST 241


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 381 LDVCIFCGAR-DFFDNTFRRICIQFSNLQHLNYKLLTSL 268
           L VC  C A     DN  RR+   FS   HL Y +L ++
Sbjct: 187 LQVCDICSAYLSRLDND-RRLADHFSGKMHLGYAMLRNI 224


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 288 NSNAEDSRTVCKYGEKCYQKNPE---HHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYS 458
           NSN +  R+  +  ++ Y +  +       Y+   +    E+ +  +    R +RF+ Y 
Sbjct: 331 NSNRDRKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKERDHRDDQSSFRNERFSNYY 390

Query: 459 SDDKP-AKQHKVGDK 500
            DD+   K+   G+K
Sbjct: 391 GDDRSYHKRRNTGNK 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,063
Number of Sequences: 5004
Number of extensions: 63885
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)