Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0611
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    31   1.3  
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415           30   1.7  
10_08_0009 + 14075929-14076789                                         29   3.0  
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     29   3.0  
10_08_0011 + 14088375-14089241                                         28   6.9  

>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +3

Query: 321 KYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHK 488
           K+ +K   K+ EH KK+KH  +  + +K  +K+  K ++K  +  S  D   K H+
Sbjct: 806 KHKDKDRDKDKEH-KKHKHRHKDRSKDKDKDKDKDKKKDKSGHHDSGGDHSKKHHE 860


>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
          Length = 126

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 292 QMLKIRELYANTAKSVIKKIPSTTKNTNIQGKQELLRKKMRRIPESSEKNV 444
           ++ KI EL    AK+ +KK P   KN   + K++  +KK ++  E  E +V
Sbjct: 35  ELKKILELRKKKAKAKVKKKPKKKKNKKAK-KKKKKKKKKKKEEEEEESDV 84


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 246 KRSGK*AGMFVWSSDHNFVSAF 181
           +R GK  G+F+WS+D + VS++
Sbjct: 250 QRQGKLPGLFIWSADSSMVSSY 271


>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 339 YQKNPEHHKKYKHPGQAGAFEKKN--EKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPE 509
           + K  E  K+ K P QA   EKK   EK P + ++        D+K  ++ K  +KK E
Sbjct: 77  FGKLAEAKKEEKKPDQAKKEEKKQPEEKKPEEKKKSEEEKKKGDEKKPEEGKKEEKKEE 135


>10_08_0011 + 14088375-14089241
          Length = 288

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 246 KRSGK*AGMFVWSSDHNFVSAF 181
           +R GK  G+F+WS+D + VS++
Sbjct: 252 QRQGKLPGLFIWSADSSKVSSY 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,171
Number of Sequences: 37544
Number of extensions: 328699
Number of successful extensions: 928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)