Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0611
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami... 34 0.088
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 31 1.1
At5g53440.1 68418.m06641 expressed protein 30 1.9
At1g07840.2 68414.m00851 leucine zipper factor-related similar t... 29 2.5
At1g07840.1 68414.m00850 leucine zipper factor-related similar t... 29 2.5
At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /... 29 3.3
At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /... 29 3.3
At2g25640.1 68415.m03073 transcription elongation factor-related... 29 3.3
At5g35260.1 68418.m04180 replication protein-related weak simila... 28 5.8
At5g12230.1 68418.m01435 expressed protein 28 5.8
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ... 28 7.7
At3g10710.1 68416.m01289 pectinesterase family protein contains ... 28 7.7
At2g37035.1 68415.m04543 expressed protein 28 7.7
>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
protein similar to SP|Q9URQ3 tRNA-specific adenosine
deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
deaminase subunit TAD3) {Saccharomyces cerevisiae};
contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 432
Score = 34.3 bits (75), Expect = 0.088
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 330 EKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPE 509
E C Q +P H + A ++ NP K+ ++ P S+ D PAK+ K + P+
Sbjct: 279 ENCSQWHPLRHASMVAIESSSARDRNLFPNPSKIFDQDHVPPSNTDSPAKKQKTSSQSPD 338
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 372 KHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPES 512
K P A A + K E K EK+ ++KP ++ K +KKP++
Sbjct: 157 KPPEIAKAEDGKKETEAAKTEEKKEGDKKEEEKPKEEAKPDEKKPDA 203
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 327 GEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKK 503
G++ ++ K KH G+ + + +K +++K DD+P K+H D+K
Sbjct: 216 GDRVLTSGDDYIKDGKHKGEKSRDKYREDKEEEDIKQK--GDKQRDDRPTKEHLRSDEK 272
>At1g07840.2 68414.m00851 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 336 CYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKK 503
C + E YK A ++ ++++ G R +F P S +DK +KQ + +K
Sbjct: 138 CEAQKSEDLSNYKPKPDLLADKEDDQEDDGVYRPPKFAPMSMEDKTSKQERDAARK 193
>At1g07840.1 68414.m00850 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 336 CYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKK 503
C + E YK A ++ ++++ G R +F P S +DK +KQ + +K
Sbjct: 138 CEAQKSEDLSNYKPKPDLLADKEDDQEDDGVYRPPKFAPMSMEDKTSKQERDAARK 193
>At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +2
Query: 86 INVQNKWLFILLSTLIICIFV 148
+NV+ +W+F L+ T ++C+F+
Sbjct: 4 VNVEKRWVFPLVITSLVCVFL 24
>At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +2
Query: 86 INVQNKWLFILLSTLIICIFV 148
+NV+ +W+F L+ T ++C+F+
Sbjct: 4 VNVEKRWVFPLVITSLVCVFL 24
>At2g25640.1 68415.m03073 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 643
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 360 HKKYKHPGQAGAFEKKNEKNPGKLREK 440
+KKYK G++ F K++ NP KLREK
Sbjct: 284 NKKYKEKGRSLLFNLKDKSNP-KLREK 309
>At5g35260.1 68418.m04180 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 272
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 LIYHFFSFWNYLFEAMSEACNSNA-EDSRTVCKYGEKCYQ 344
L Y W+Y+ +AMSE N +A + VC+ GE Y+
Sbjct: 123 LKYPCLEDWDYVTDAMSEVTNISAIKKFPFVCRQGETDYE 162
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = +3
Query: 276 SEACNSNAEDSRTVCKYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPY 455
S++ + + + R K+ ++ K+ EH KK+KH + + +K +K+ + ++K +
Sbjct: 116 SKSKSESKDRDRKHKKHKDRDKDKDREH-KKHKHKHKDRSKDKDKDKDRDRKKDKN-GHH 173
Query: 456 SSDDKPAKQHKVGDKKPESN*KMDL 530
S D K H DKK + + DL
Sbjct: 174 DSGDHSKKHH---DKKRKHDGDEDL 195
>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
PF03556: Domain of unknown function (DUF298)
Length = 295
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +3
Query: 300 EDSRTVCKYG----EKCYQKNPEHHKKYKHP 380
+D+ CK G E C + EHHK Y+ P
Sbjct: 187 KDTSLFCKCGDTESESCLYQEDEHHKDYRRP 217
>At3g10710.1 68416.m01289 pectinesterase family protein contains
similarity to pectinesterase GB:AAB57671 [Citrus
sinensis]; contains Pfam profile: PF01095 pectinesterase
Length = 561
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +1
Query: 340 IKKIPSTTKNTNIQGKQELLRKKMRRIPESSEKNVLIHIR 459
++K+ + GK +++ ++ +PE SEK +I+++
Sbjct: 250 LRKVADIVVAKDGSGKYRTIKRALQDVPEKSEKRTIIYVK 289
>At2g37035.1 68415.m04543 expressed protein
Length = 433
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 509 FRFFISYFMLLSRFVIARIWIKTFFSELSGILLIFFL 399
FR F+ + L F + WI+ F E+SG L +FL
Sbjct: 317 FRLFVR--LKLMPFTVMPPWIRGFEKEISGFLFAWFL 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,889
Number of Sequences: 28952
Number of extensions: 303018
Number of successful extensions: 989
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -