Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0610
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    29   0.77 
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    28   1.3  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   1.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   4.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    27   4.1  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   5.4  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   5.4  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   9.5  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   9.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.5  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   9.5  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 25  TEKLRSARLEWYGHVMRRNENEVGKRVLTMNVEGYRG---RGRPKKKWMDCVK 174
           T  L+S  L  +G  +++NE  + K  + + +EG R    R   +K W+ C K
Sbjct: 308 TRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 55  WYGHVMRRNENEVGKRVLTMNVEGYRG-RGRPKKK 156
           W  HV+R    E+ KR +  N++ +RG  G+ KKK
Sbjct: 60  WKDHVLRDFGLELQKRTILNNIDDWRGLYGKLKKK 94


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 256 TPGDWEKGRRMMMFINNSRVFPEIGKKHEF 345
           T  DWE   R + F+ N  V  +   KH+F
Sbjct: 396 TENDWEDNERGVSFVFNKNVIRQFLAKHDF 425


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = -3

Query: 311 RLLLMNIIILLPFSQSPGVAQHVFSFHTPLSYYTISSLTPLLHISSFTQSIHFFLGLPLP 132
           R L++ I+   P   +  + ++  +    LSY  IS ++ L  I        F+      
Sbjct: 277 RELVLKILKACPDITASFIERNSLTSEPVLSYQWISFVSLLQAILGMGIPFPFYDAETRT 336

Query: 131 LYPSTFIVSTLLPTSFS 81
           + P+  I+  +LP+SFS
Sbjct: 337 VPPTNIIIENILPSSFS 353


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 721 HFSFYCFDGWRCSHSPPGVKWLLEPI 644
           H+ F CF+G +      GV  L  PI
Sbjct: 77  HYGFECFEGMKAFRDEKGVPRLFRPI 102


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 548 SFPKNSRSRAANTLETLELVSQDGW 622
           SFP   RSR A+  E LEL+ + G+
Sbjct: 211 SFPTVQRSRYASDFEELELLGKGGY 235


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 411 SYTSVPQNCMQHEESNAKPTNMKFV 337
           S +S+P  C   EES   P+  KF+
Sbjct: 366 SSSSIPDECNTEEESRINPSTSKFL 390


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 52  EWYGHVMRRNENEVGKRVLTMNVEGYRGRGRPKKKWMDCVKDD 180
           EW+    ++ + E  +R     VEGYR RGR  +  +    DD
Sbjct: 540 EWFRET-QKGDFETWERECFSQVEGYRWRGRTYQHCLASGLDD 581


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 191 LLHISSFTQSIHFFLGLPLPLYPSTFIVSTL 99
           LL I SF QS +FFL      +PST I+ TL
Sbjct: 325 LLTIKSFYQSGNFFLDFLKEKFPST-ILETL 354


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 113  IVSTLLPTSFSFRLITCPYHSKRALLSFS 27
            ++STL+  + S  ++ C Y  K+ + SFS
Sbjct: 1157 VLSTLIAAALSPNVVKCVYPDKKFVASFS 1185


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 206 SSLTPLLHISSFTQSIHFFLGLPLPLYPSTFIVSTLLPTSFSFRLITCPYHSKR 45
           S+ TPL H+S+   + +++ G P P+  S      + P+S   R I    HSK+
Sbjct: 284 SNSTPLKHLSAQKPNSNYYTGPPTPVSISN-TPENIHPSSSEVRRIAS--HSKQ 334


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 351 NMKFVFFAYFRENSTIVNEHHH 286
           N+K++F   F  N   +N +HH
Sbjct: 147 NLKYIFLTVFSANLNALNFYHH 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,999
Number of Sequences: 5004
Number of extensions: 82225
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)