Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0610
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0998 - 26742608-26742802,26743137-26743325,26743600-267436...    31   1.4  
02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022           29   3.3  
04_04_0398 + 24933894-24933916,24934015-24934555                       29   4.3  
03_05_1013 + 29680057-29680226,29682272-29682417,29683417-296834...    29   4.3  
05_07_0075 - 27513927-27514220,27514806-27515117,27515203-275153...    28   7.5  

>06_03_0998 -
           26742608-26742802,26743137-26743325,26743600-26743657,
           26743990-26744056,26744368-26746504
          Length = 881

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -3

Query: 305 LLMNIIILLPFSQSPGVAQHVFSFHTPLSYYTISSLTPLLHISSFTQSIHFFLGLPLPLY 126
           +L  + +LLP ++    A    +   PLS   +  L    H S+ T+  H F  LPL  +
Sbjct: 1   MLPRLRVLLPGTRGLSTASPAEAAPAPLSAAELELLLRRDHYSASTRRFHSF--LPLLSH 58

Query: 125 PSTFIVSTLL 96
           PS  + S LL
Sbjct: 59  PSLLLSSALL 68


>02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022
          Length = 382

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -1

Query: 241 SPSILLYHIIPFLRSLPSYTYRLSRNPSISS*VYLFLYILPHS*LALSYQPHFHF 77
           SPS    H  P ++ LP + YR  R+P   S  + F+++   S  A SY P  HF
Sbjct: 65  SPSCHCRHSRPMVQ-LPLHGYR-RRHPGRWSHYFAFVFVQHDSSPASSYLPRLHF 117


>04_04_0398 + 24933894-24933916,24934015-24934555
          Length = 187

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 145 PKKKWMDCVKDDMCKRGVSEEMV*YDRGVWKE 240
           PKKK+  CV+D+   + ++E+++     +W+E
Sbjct: 19  PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50


>03_05_1013 +
           29680057-29680226,29682272-29682417,29683417-29683493,
           29683577-29683699,29683781-29683849,29684824-29684925,
           29684998-29685078,29685161-29685313,29685442-29685513,
           29685773-29685936,29686046-29686091,29686268-29686337,
           29686509-29686594
          Length = 452

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 308 LLLMNIIILLPFSQSPGVAQHVFSFHTPLSYY 213
           L L+ +++LLP S S  V  H+  FH  L +Y
Sbjct: 22  LFLLLLLLLLPCSASSSVITHLPGFHGRLRFY 53


>05_07_0075 -
           27513927-27514220,27514806-27515117,27515203-27515342,
           27515502-27515565,27515637-27516083,27516169-27516303,
           27517620-27517737,27517857-27517876
          Length = 509

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
 Frame = -3

Query: 479 SVDELISYRHLQGSYDIVSKLQDHTRLCLKIVCNTKKATPSQR--T*NSCFLPISGKTRL 306
           SV  L++YR   G   +   L    ++CL ++ NT   +  +R    NS  L +    + 
Sbjct: 305 SVPPLVNYR--SGGLRLNPNLYACGKVCLSLL-NTWSGSGCERWSPSNSTMLQVLVSVQA 361

Query: 305 LLMNIIILLPFSQSPGVAQHVFSFHTPLSYYTISSLTPLLHISSFTQSI 159
           L++N     P+   PG A H  + H   S  T +  T LL   +   S+
Sbjct: 362 LVLNA---KPYFNEPGYAMHANTPHGEKSSLTYNEDTFLLSCRTMLYSL 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,530,345
Number of Sequences: 37544
Number of extensions: 527578
Number of successful extensions: 1278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)