Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0610
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    34   0.14 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    34   0.14 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    34   0.14 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    34   0.14 
Z78413-4|CAB01664.1|  329|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    31   1.3  
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    31   1.3  
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81069-4|CAB02991.1|  370|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical...    28   8.9  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34  LRSARLEWYGHVMRRNENEVGKRVLTMNVEGY-RGRGRPKKKWMDCVKDDMCKRGVSEEM 210
           ++  +L W GHV RR +      +      G+ R  GRP  +W D ++ ++  R    E+
Sbjct: 807 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEV 866

Query: 211 V 213
           +
Sbjct: 867 I 867


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34   LRSARLEWYGHVMRRNENEVGKRVLTMNVEGY-RGRGRPKKKWMDCVKDDMCKRGVSEEM 210
            ++  +L W GHV RR +      +      G+ R  GRP  +W D ++ ++  R    E+
Sbjct: 982  VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEV 1041

Query: 211  V 213
            +
Sbjct: 1042 I 1042


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34  LRSARLEWYGHVMRRNENEVGKRVLTMNVEGY-RGRGRPKKKWMDCVKDDMCKRGVSEEM 210
           ++  +L W GHV RR +      +      G+ R  GRP  +W D ++ ++  R    E+
Sbjct: 721 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEV 780

Query: 211 V 213
           +
Sbjct: 781 I 781


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34  LRSARLEWYGHVMRRNENEVGKRVLTMNVEGY-RGRGRPKKKWMDCVKDDMCKRGVSEEM 210
           ++  +L W GHV RR +      +      G+ R  GRP  +W D ++ ++  R    E+
Sbjct: 333 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEV 392

Query: 211 V 213
           +
Sbjct: 393 I 393


>Z78413-4|CAB01664.1|  329|Caenorhabditis elegans Hypothetical
           protein T01C3.4 protein.
          Length = 329

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 261 WGRATCFLLPYSSIILYHFFAHSPLTHIVF 172
           WGR+TCF+      ++YH + H     + +
Sbjct: 283 WGRSTCFIPTSDGKVVYHVYTHMETKELTY 312


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 269 QSPGVAQHVFSFHT--PLSYYTISSLTPLLHISSFTQSIHFFLGLPLPLYPST 117
           +SP V   VF+  T  P+ +   ++ TPL+ +     ++HF  G+ +P  P T
Sbjct: 253 RSPPVVARVFTTSTMAPVMFTFPTTTTPLMPLFPIIPNVHFKQGVGVPFAPGT 305


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 269 QSPGVAQHVFSFHT--PLSYYTISSLTPLLHISSFTQSIHFFLGLPLPLYPST 117
           +SP V   VF+  T  P+ +   ++ TPL+ +     ++HF  G+ +P  P T
Sbjct: 255 RSPPVVARVFTTSTMAPVMFTFPTTTTPLMPLFPIIPNVHFKQGVGVPFAPGT 307


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 34  LRSARLEWYGHVMRRNENEVGKRVLTMN----VEGYRGRGRPKKKWMDCVKDDMCKR 192
           ++  +L W GHV RR +   G+    MN     +  R  GRP  +W D ++ ++  R
Sbjct: 118 IKKRKLGWAGHVARRTD---GRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTR 171


>Z81069-4|CAB02991.1|  370|Caenorhabditis elegans Hypothetical
           protein F25H9.4 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 491 SIISSVDELISYRHLQGSYDIVSKLQDHTRLCLKIVCNTKKATPSQRT*NSCFL 330
           +I++ V  + ++ HL GSY   S L++H  +   +   + KA  SQ+   S +L
Sbjct: 49  NIVTLVFNIYNFEHLDGSY--TSDLKEHNGIYWCVRIQSNKAAKSQKRRVSIYL 100


>Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical
           protein W07G1.3 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 206 SSLTPLLHISSFTQSIHFFLGLPLPLYPSTFIVSTLLP 93
           S  +P     +  Q  +++  LPLP  P TF  STL+P
Sbjct: 87  SPASPDFSCPTTPQPSNYYTPLPLPQQPPTFDPSTLMP 124


>AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical
            protein Y22D7AR.12 protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -1

Query: 718  FSFYCFDGWRCSHSPPGVKWLLEPIYIYNVNAPPILRYKF*GLKCICRSRSAVF 557
            F+ Y + GW  S  P   K +L  + + N +  P++ + + G     RSRSA F
Sbjct: 951  FNHYWYRGWGKSSIPESPKTMLALLDMVNASKTPVIVHCYDG-----RSRSACF 999


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,224,817
Number of Sequences: 27780
Number of extensions: 463615
Number of successful extensions: 1210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)