Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0610
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.47 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.47 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.47 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.47 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.47 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.8  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 WSFETMSYDPCKCRYDMSSSTELMIDSSRDGSCLLKPPNL 534
           W  + + Y+     +D +  T +++  + DGSCL  PP +
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVV--THDGSCLYVPPGI 106


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 WSFETMSYDPCKCRYDMSSSTELMIDSSRDGSCLLKPPNL 534
           W  + + Y+     +D +  T +++  + DGSCL  PP +
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVV--THDGSCLYVPPGI 106


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 WSFETMSYDPCKCRYDMSSSTELMIDSSRDGSCLLKPPNL 534
           W  + + Y+     +D +  T +++  + DGSCL  PP +
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVV--THDGSCLYVPPGI 106


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 WSFETMSYDPCKCRYDMSSSTELMIDSSRDGSCLLKPPNL 534
           W  + + Y+     +D +  T +++  + DGSCL  PP +
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVV--THDGSCLYVPPGI 106


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 WSFETMSYDPCKCRYDMSSSTELMIDSSRDGSCLLKPPNL 534
           W  + + Y+     +D +  T +++  + DGSCL  PP +
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVV--THDGSCLYVPPGI 106


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 317 KTRLLLMNIIILLPFSQSPGVAQHVFSFHTPL--SYYTISSLTP 192
           K  L LMN  + +P S  PG  + V S+ T L  +  T+S + P
Sbjct: 697 KKALELMNRAVSVPQSHQPGAMEQV-SYLTSLERTQPTMSQMPP 739


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +1

Query: 241 KTCCATPGDWEKGRRMMMFINNSRVFPEIGK 333
           K C  +   WE G+ +  FI    +    GK
Sbjct: 316 KNCADSGSIWETGKNLFEFIRKQVLSGSTGK 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,738
Number of Sequences: 438
Number of extensions: 5704
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)