Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0610
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR... 30 1.6
At1g49730.1 68414.m05575 protein kinase family protein contains ... 29 2.7
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 29 3.6
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 29 3.6
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r... 28 6.3
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont... 28 6.3
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 6.3
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 28 8.3
At5g61800.1 68418.m07755 pentatricopeptide (PPR) repeat-containi... 28 8.3
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 28 8.3
At1g56540.1 68414.m06502 disease resistance protein (TIR-NBS-LRR... 28 8.3
>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 238 EKTCCATPGDWEKGRRMMMFINNSRVFPEIGKKHEFHVRWLGVAFFVLHT 387
E CC P + + R +FI + +FP+ K HE V + F HT
Sbjct: 905 EVHCCELPYHFLRVRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHT 954
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 345 KFVFFAYFRENSTIVNEHHHSPALLPVTWGRATCFLLPYSSIILY-HFFAHSPLTH 181
+F+ + Y + S + +H H+ P +WG + ++ + Y HF+ PL H
Sbjct: 396 RFLVYDYMKNGS--LKDHLHAIGKPPPSWGTRMKIAIDVANALEYLHFYCDPPLCH 449
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -1
Query: 775 YSKTVKDGVVRNVT*FQIHFSFYCFDGWRCSHSPPGVKWLLEPIYIYNVNAPP 617
YSK + V + FQ +S FD W+ S SPP LL+P Y + PP
Sbjct: 303 YSKPLYGAVKLELPSFQ--YSETTFDQWKKSSSPPHSD-LLDPFDTYIQSPPP 352
>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 451
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -1
Query: 775 YSKTVKDGVVRNVT*FQIHFSFYCFDGWRCSHSPPGVKWLLEPIYIYNVNAPP 617
YSK + V + FQ +S FD W+ S SPP LL+P Y + PP
Sbjct: 303 YSKPLYGAVKLELPSFQ--YSETTFDQWKKSSSPPHSD-LLDPFDTYIQSPPP 352
>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1094
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 131 EEEVDL--RRNGWIA*KTICVRGE*AKKWYNMIEEYGRRKHVARPQV 265
EE + L N W+ + C+ GE W N++ G RK RP++
Sbjct: 1044 EEHICLAYEENRWVNLRRECIAGEDVGDWKNVVRFCGERK--VRPEI 1088
>At1g74180.1 68414.m08591 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 951
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 182 ISSFTQSIHFFLGLPLPLYPSTFIVST-LLPTSFSFRLITCPYHSKRALLSFSVAT 18
+S F+Q I F L + Y STF+V +L ++ ++ + +K+ SFS T
Sbjct: 701 LSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGT 756
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 427 TMSYDPCKCRYDMSSSTELMIDSSRDGSCLLKPP 528
T Y +CR++++ + ID + + C++ PP
Sbjct: 95 TTGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHPP 128
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1132
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 131 EEEVDL--RRNGWIA*KTICVRGE*AKKWYNMIEEYGRRKHVARPQV 265
EE V L +N W+ + C GE W N++ G RK RP++
Sbjct: 1078 EEHVCLAYEKNRWVNLRRECFAGEDVGDWKNVVRFCGERK--VRPEI 1122
>At5g61800.1 68418.m07755 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 499
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 244 TCCATPGDWEKGRRMMMFINNSRVF 318
+ CA GDW+KG+ + + R+F
Sbjct: 257 SACAQSGDWQKGKAIHDYTKRKRLF 281
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 VATEKLRSARLEWYGHVMR-RNENEVGKRVLTMNVEGYRGRGRPKK 153
VA++ LR + + HV+R ++E++V + +E RGRGRPKK
Sbjct: 1431 VASKPLRRSGRQ-LKHVIRLQDESKVPEGSKKRKLETKRGRGRPKK 1475
>At1g56540.1 68414.m06502 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1096
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -3
Query: 581 LPLAICCF*GSSTAYARLGGFSRHDPSRDESIISSVDELISYRHLQGSYDIVSKLQDHTR 402
LP C G + ++G S H+ +D+++ + +Y+H +++K + R
Sbjct: 406 LPRLQTCLDGRIESVLKVGYESLHE--KDQALFLYIAVFFNYQHADYVTSMLAKTNLNVR 463
Query: 401 LCLKIVCN 378
L LKI+ N
Sbjct: 464 LGLKILAN 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,002,461
Number of Sequences: 28952
Number of extensions: 429572
Number of successful extensions: 1085
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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