Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0609
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)              139   2e-33
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   4e-13
SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   4e-08
SB_19311| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            51   9e-07
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      41   0.001
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)                   29   4.0  
SB_44294| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)               29   5.2  
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)                 28   9.1  
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)                      28   9.1  
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score =  139 bits (337), Expect = 2e-33
 Identities = 65/84 (77%), Positives = 73/84 (86%)
 Frame = -2

Query: 508  DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
            D+RKQ+      HKLDVVS GK+T R+QK I SGFFRNAA+KDPQEGYRT+VD+QVVYIH
Sbjct: 828  DIRKQI------HKLDVVSCGKHTARVQKAITSGFFRNAARKDPQEGYRTVVDNQVVYIH 881

Query: 328  PSSALFNRQPEWVIYHELVQTTKE 257
            PSSALFNRQPEWV+YHELV TTKE
Sbjct: 882  PSSALFNRQPEWVVYHELVLTTKE 905



 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/76 (76%), Positives = 63/76 (82%)
 Frame = -3

Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
           CSDEILTIVSMLSVQNVFYRP            KF+QPEGDHLTLLAVYNSW+NNKFSNA
Sbjct: 752 CSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNA 811

Query: 555 WCYENFVQIRTLKRAQ 508
           WC+ENFVQ R+L+RAQ
Sbjct: 812 WCFENFVQARSLRRAQ 827


>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = -3

Query: 729 DEILTIVSMLSVQN-VFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNAW 553
           + +LTI++MLSV N +FYRP             F +P GDHLTLL VY+ W    +S  W
Sbjct: 492 NRMLTIIAMLSVNNAIFYRPKDKIVHADNARTNFFRPGGDHLTLLNVYDQWAETDYSTQW 551

Query: 552 CYENFVQIRTLKRAQ 508
           CYENF+Q R++KRA+
Sbjct: 552 CYENFIQHRSMKRAR 566



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = -2

Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQV---- 341
           DVR+QL G+++R ++++ S   +   I+K + +GFF + A+      YRT+   Q+    
Sbjct: 567 DVREQLEGLIERAEIEMSSNPGDFTAIRKAVTAGFFYHTARLGRGGQYRTVKHQQMARGS 626

Query: 340 -VYIHPSSALFNRQPEWV 290
            V  HP S   N +  ++
Sbjct: 627 HVTEHPKSRRTNTEHRYL 644


>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 34/83 (40%), Positives = 54/83 (65%)
 Frame = -2

Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
           D+RKQL  I  R ++ + S GK++  +++ +C G F N+A+      Y+TL   + V IH
Sbjct: 578 DIRKQLREICIRLEIKLQSCGKDSATLRQCLCRGLFMNSAELQLDGTYQTLNHRETVAIH 637

Query: 328 PSSALFNRQPEWVIYHELVQTTK 260
           PSS+LF  +P +V+Y+ELV T+K
Sbjct: 638 PSSSLFMSKPAYVVYNELVHTSK 660



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = -3

Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
           CS+EILT+V++LSV ++ Y P            KF   EGD +TLL +Y +++    + +
Sbjct: 502 CSEEILTVVALLSVDSITYTPQSKRDHALKVRKKFLSSEGDQITLLNIYRAYKQCGMNKS 561

Query: 555 WCYENFVQIRTLK 517
           WC E+F+  R +K
Sbjct: 562 WCAEHFINTRVMK 574



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 254 MREVTTIDPKWLVEFAPAFFK 192
           MR+V+ +   WL+E AP FF+
Sbjct: 663 MRDVSVVSCDWLLEAAPGFFQ 683


>SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 25/65 (38%), Positives = 37/65 (56%)
 Frame = -3

Query: 705 MLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNAWCYENFVQIR 526
           ++ +  VF RP            KF   +GDHLTLL VY++++ N     WCY+NF+Q R
Sbjct: 164 LVPLPQVFLRPNEAKKAADESKMKFAHIDGDHLTLLNVYHAYKQNHEDTQWCYDNFIQHR 223

Query: 525 TLKRA 511
           ++K A
Sbjct: 224 SMKSA 228


>SB_19311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = -3

Query: 633 FNQPEGDHLTLLAVYNSWRNNKFSNAWCYENFVQIRTLKRA 511
           F   +GDHLTLL VY++++ N     WCY+NF+Q R++K A
Sbjct: 3   FAHIDGDHLTLLNVYHAYKQNHEDTQWCYDNFIQHRSMKSA 43


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 25/52 (48%), Positives = 30/52 (57%)
 Frame = -3

Query: 720  LTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKF 565
            +TIVSMLSV  +F+RP            KF  PE DHLT L VY  W+ NK+
Sbjct: 953  MTIVSMLSVPAIFFRPKGREEDSDAAREKFAVPESDHLTYLNVYLQWKTNKY 1004



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
 Frame = -2

Query: 337  YIHPSSALFNR--QPEWVIYHELVQTTKE**GKSRP*TRNGWLSLLPP---SLNSRTQQN 173
            ++HP+SALF     P++++YHELV T+KE   +        WL+ L P   S+   T+  
Sbjct: 1075 HLHPTSALFGMGYTPDYIVYHELVMTSKE-YMQCVTAVDGNWLAELGPMFYSVKESTRSR 1133

Query: 172  SLNLRRTRD 146
            + N RR ++
Sbjct: 1134 AENRRRAKE 1142


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -3

Query: 726  EILTIVSMLSVQ-NVFYRPXXXXXXXXXXXXKFN--QPEGDHLTLLAVYNSWRNN--KFS 562
            E L + S+ +V  +VF+R             KF   Q EGD LTLLAVY  W N   +  
Sbjct: 1131 ECLVLCSVATVNGSVFFRMGTEDEKKEADMHKFEFCQSEGDFLTLLAVYKEWWNEDPRDR 1190

Query: 561  NAWCYENFVQIRTLKRAQ 508
              WC+E  +  + L+ A+
Sbjct: 1191 GRWCFEKSLNAKALRLAE 1208



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
 Frame = -2

Query: 430  IQKTICSGFFRNAA--KKDPQEGYRTLVDSQVVYIHPSSAL--FNRQPEWVIYHELVQTT 263
            +QK + S F  N        + GY+ L D + V +HPSSA+     +P++++Y + ++TT
Sbjct: 1244 LQKIVMSCFSENLCVFSGHSRVGYKNLYDGEYVQLHPSSAINFIGTEPKFLVYEKTLRTT 1303

Query: 262  KE 257
            ++
Sbjct: 1304 QD 1305


>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1168

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = -2

Query: 340  VYIHPSSALFNRQPEWVIYHELVQTTK 260
            V+IHP SALF+  P++V+Y E+V+T+K
Sbjct: 967  VFIHPKSALFSVLPQYVVYQEVVETSK 993


>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
          Length = 348

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = -1

Query: 407 LLQERGQEGSPGRI*DARGQSSCLYTSFQCTVQQTTGMGNLP*ASTDYERVMREVTTIDP 228
           LLQE  Q    G+    R Q +C  T ++   +    M  L      +    R + ++DP
Sbjct: 257 LLQEISQAALDGQSIQTRLQRACTLT-YRLESENAFLMDTLNLLRDTWHCFPRTLPSLDP 315

Query: 227 KWLVEFAPAFFKFSDPTKLSKFK 159
             +   APA F FS P     F+
Sbjct: 316 TTVFTLAPAPFLFSPPKNSITFQ 338


>SB_44294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 555 WCYENFVQIRTLKRA 511
           WCY+NF+Q R++K A
Sbjct: 7   WCYDNFIQHRSMKSA 21


>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 661 GACRPEEGQVQPAGRGPPDATG 596
           GA + E G   PAGRGP  ATG
Sbjct: 593 GARKSEGGASAPAGRGPSPATG 614


>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
          Length = 889

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
 Frame = -2

Query: 442 NTVRIQKTICSGFFRNAAKKDPQEGYR------TLVDSQVVYIHPSSA---LFNRQPEWV 290
           N   ++  +C+G + N A+ +  +  +      T  D +V  +HP S    +   Q +W+
Sbjct: 31  NIKLVKAILCAGLYPNVARIEHHDKLKRPPRLFTQEDGKVA-LHPKSVNVEVTAFQNDWL 89

Query: 289 IYHELVQTTK 260
           IYH+ ++++K
Sbjct: 90  IYHQKIKSSK 99


>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 269 DYERVMREVTTIDPKWLVEFAPAFFKFSDPT 177
           D +R   + T  DP+WL +  PA+ ++++ T
Sbjct: 624 DIDRAFTDETGYDPQWLPDDHPAYQEYTEAT 654


>SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 885

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 263 ERVMREVTTIDPKWLVEFAPAFFKFSDPT 177
           +R + E T  DP+WL +  PA+ ++++ T
Sbjct: 259 DRALTEETGYDPQWLPDDHPAYQEYTEAT 287


>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 266 YERVMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRL 144
           YERV+RE+T ++ K   E     FKF    +  +FK N+++
Sbjct: 759 YERVLREMTYVNKK-PKEHPRHTFKFHVSDQNGRFKSNEKV 798


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,174,669
Number of Sequences: 59808
Number of extensions: 419981
Number of successful extensions: 1280
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)