Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0609
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 138 5e-33
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 81 8e-16
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 80 2e-15
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 80 2e-15
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 78 7e-15
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 73 2e-13
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 71 6e-13
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 67 1e-11
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 64 9e-11
At5g14900.1 68418.m01748 helicase associated (HA2) domain-contai... 56 2e-08
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 50 1e-06
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 48 5e-06
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 48 7e-06
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 42 4e-04
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 39 0.004
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 37 0.016
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 36 0.021
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.4
At3g12760.1 68416.m01593 expressed protein similar to RP42 prote... 29 2.4
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont... 28 5.7
At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ... 28 5.7
At3g31370.1 68416.m03999 hypothetical protein contains similarit... 28 5.7
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00575:
S1 RNA binding domain
Length = 1168
Score = 138 bits (333), Expect = 5e-33
Identities = 62/84 (73%), Positives = 74/84 (88%)
Frame = -2
Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
DVRKQLL IMD++KLDVV+AGKN +I+K I +GFF + A+KDPQEGYRTLV++Q VYIH
Sbjct: 1027 DVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIH 1086
Query: 328 PSSALFNRQPEWVIYHELVQTTKE 257
PSSALF RQP+WVIYH+LV TTKE
Sbjct: 1087 PSSALFQRQPDWVIYHDLVMTTKE 1110
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
CSDEILT+++M+ N+FYRP KF QPEGDHLTLLAVY +W+ FS
Sbjct: 951 CSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGP 1010
Query: 555 WCYENFVQIRTLKRAQ 508
WC+ENF+Q R+L+RAQ
Sbjct: 1011 WCFENFIQSRSLRRAQ 1026
Score = 88.6 bits (210), Expect = 4e-18
Identities = 36/50 (72%), Positives = 43/50 (86%)
Frame = -1
Query: 254 MREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAW 105
MREVT IDPKWLVE AP FFK SDPTK+SK K+ +R+EPLY++Y EPN+W
Sbjct: 1112 MREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSW 1161
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = -3
Query: 738 QCSDEILTIVSMLSVQ-NVFYRPXXXXXXXXXXXXKFNQPE-GDHLTLLAVYNSWRNNKF 565
+CSDEI++I +MLS+ ++FYRP F+ GDH+ LL VY+SW+ F
Sbjct: 839 KCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNF 898
Query: 564 SNAWCYENFVQIRTLKRAQ 508
S WCYEN++Q+R++KRA+
Sbjct: 899 STQWCYENYIQVRSMKRAR 917
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = -2
Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
D+R QL G+++R ++D+ S ++K+I +GFF + AK YRT+ Q V+IH
Sbjct: 918 DIRDQLEGLLERVEIDISSNLNELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIH 977
Query: 328 PSSALFNRQPEWVIYHELVQTTKE 257
P+S L P WV+YHELV T+KE
Sbjct: 978 PNSGLSQVLPRWVVYHELVLTSKE 1001
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 254 MREVTTIDPKWLVEFAPAFFKFSD 183
MR+VT + P+WL+E AP +++ D
Sbjct: 1003 MRQVTELKPEWLIELAPHYYQLKD 1026
>At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 883
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = -2
Query: 544 KLRADQDVEAGPDVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGY 365
K + ++ D+R QLLG++++ +++ S + I+K I +GFF ++AK Y
Sbjct: 722 KFIQSKSMKRARDIRDQLLGLLNKIGVELTSNPNDLDAIKKAILAGFFPHSAKLQKNGSY 781
Query: 364 RTLVDSQVVYIHPSSALFNRQP-EWVIYHELVQTTKE 257
R + + Q VY+HP+S LF P +W++YHELV TTKE
Sbjct: 782 RRVKEPQTVYVHPNSGLFGASPSKWLVYHELVLTTKE 818
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = -3
Query: 738 QCSDEILTIVSMLSVQN-VFYRPXXXXXXXXXXXXKFNQPE---GDHLTLLAVYNSWRNN 571
+CS EI+TI +MLSV N VFYRP F + GDH+ LL VYNSW+
Sbjct: 653 KCSKEIITIAAMLSVGNSVFYRPKNQQVFADKARMDFYEDTENVGDHIALLRVYNSWKEE 712
Query: 570 KFSNAWCYENFVQIRTLKRAQ 508
+S WC E F+Q +++KRA+
Sbjct: 713 NYSTQWCCEKFIQSKSMKRAR 733
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 254 MREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLE 141
MR T + P+WL+E AP ++K D K +R+E
Sbjct: 820 MRHTTEMKPEWLIEIAPHYYKLKDIEDTRPKKTQRRIE 857
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = -3
Query: 738 QCSDEILTIVSMLSV-QNVFYRPXXXXXXXXXXXXKFNQPE-GDHLTLLAVYNSWRNNKF 565
+CSDEI++I +MLS+ ++FYRP F+ GDH+ L +YNSW+ +
Sbjct: 905 KCSDEIISIAAMLSIGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKETNY 964
Query: 564 SNAWCYENFVQIRTLKRAQ 508
S WCYEN++Q+R++KRA+
Sbjct: 965 STQWCYENYIQVRSMKRAR 983
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = -2
Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
D+R QL G+++R ++DV S I+K+I +GFF + AK YRT+ Q V+IH
Sbjct: 984 DIRDQLEGLLERVEIDVSSNANELDSIRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIH 1043
Query: 328 PSSALFNRQPEWVIYHELVQTTKE 257
P+S L P WV+YH+LV T+KE
Sbjct: 1044 PASGLSQVLPRWVVYHQLVLTSKE 1067
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 254 MREVTTIDPKWLVEFAPAFFKFSD 183
MR+VT + P+WL+E AP +++ D
Sbjct: 1069 MRQVTELKPEWLIEIAPHYYQLKD 1092
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
C DE+LTIVSMLSV +VF+RP KF PE DHLTLL VY W+ + +
Sbjct: 969 CIDEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQWKEHDYRGD 1028
Query: 555 WCYENFVQIRTLKRAQ 508
WC ++++Q++ L++A+
Sbjct: 1029 WCNDHYLQVKGLRKAR 1044
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = -2
Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
+VR QLL I+ + K+++ S G + ++K ICS +F N+A+ Y ++H
Sbjct: 1045 EVRSQLLDILKQLKIELRSCGPDWDIVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLH 1104
Query: 328 PSSALF--NRQPEWVIYHELVQTTKE 257
PSSAL+ P++V+YHEL+ TTKE
Sbjct: 1105 PSSALYGLGYTPDYVVYHELILTTKE 1130
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 254 MREVTTIDPKWLVEFAPAFFKFSD-PTKLSKFKKNQRLE 141
M+ T+++P WL E P FF D T + + KK Q+ E
Sbjct: 1132 MQCATSVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEE 1170
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/75 (45%), Positives = 45/75 (60%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
CS+EIL++ +MLSV N F RP +F EGDHLTLL VY++++ N
Sbjct: 510 CSNEILSVSAMLSVPNCFIRPREAQKAADEAKARFGHIEGDHLTLLNVYHAFKQNNEDPN 569
Query: 555 WCYENFVQIRTLKRA 511
WCYENF+ R +K A
Sbjct: 570 WCYENFINNRAMKSA 584
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Frame = -2
Query: 523 VEAGPDVRKQLLGIMDRHKLDVVSAGKNT----VRIQKTICSGFFRNAAKKDPQEGYRTL 356
+++ +VR+QL+ IM R L + S N+ + I+K + +G+F A + Y T+
Sbjct: 581 MKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTV 640
Query: 355 VDSQVVYIHPSSALFNRQPEWVIYHELVQTTK 260
D+QVV++HPS+ L + +PEWVIY+E V T++
Sbjct: 641 KDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSR 671
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
CS+EIL++ +MLSV N F RP +F +GDHLTLL VY++++ N
Sbjct: 514 CSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPN 573
Query: 555 WCYENFVQIRTLKRA 511
WC+ENFV R +K A
Sbjct: 574 WCFENFVNNRAMKSA 588
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Frame = -2
Query: 523 VEAGPDVRKQLLGIMDRHKLDVVSAGKNT----VRIQKTICSGFFRNAAKKDPQEGYRTL 356
+++ +VR+QL+ IM R L + S N+ V I+K + +G+F A + Y T+
Sbjct: 585 MKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTV 644
Query: 355 VDSQVVYIHPSSALFNRQPEWVIYHELVQTTK 260
D+QVV++HPS+ L + +PEWVIY+E V TT+
Sbjct: 645 KDNQVVHLHPSNCL-DHKPEWVIYNEYVLTTR 675
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = -2
Query: 529 QDVEAGPDVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEG--YRTL 356
Q ++ ++R QL I R + + S + ++K + +GFF NA + +P Y+T+
Sbjct: 582 QSMKKVVEIRDQLKRIARRLGITLKSCDGDMEAVRKAVTAGFFANACRLEPHSNGVYKTI 641
Query: 355 VDSQVVYIHPSSALFNRQPEWVIYHELVQTTKE 257
S+ VYIHPSS LF P+WV+Y +V T ++
Sbjct: 642 RGSEEVYIHPSSVLFRVNPKWVVYQSIVSTERQ 674
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
CS EI+TI ++LSVQ+V+ +F EGDH+T L VY + +K
Sbjct: 513 CSHEIITIAAVLSVQSVWIIARGVQKEQDEAKLRFAAAEGDHVTFLNVYKGFLESKKPTQ 572
Query: 555 WCYENFVQIRTLKR 514
WCY+NF+ +++K+
Sbjct: 573 WCYKNFLNYQSMKK 586
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 254 MREVTTIDPKWLVEFAPAFFK 192
MR V TI+P WL E AP F++
Sbjct: 676 MRNVVTINPSWLTEVAPHFYQ 696
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/84 (34%), Positives = 53/84 (63%)
Frame = -2
Query: 508 DVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIH 329
D+ +Q+ +++ +V S G + + ++ + + FF AA++ YR L +VV+IH
Sbjct: 609 DIYRQIREHVEQIGFNVSSCGNDMLAFRRCLAASFFLKAAQRQLDGTYRALESGEVVHIH 668
Query: 328 PSSALFNRQPEWVIYHELVQTTKE 257
P+S LF +PE VI++EL+QT+K+
Sbjct: 669 PTSVLFRAKPECVIFNELMQTSKK 692
Score = 51.2 bits (117), Expect = 7e-07
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVY----------- 589
C +E+L V++LSV+++FY P F EGDHLT L+VY
Sbjct: 519 CLEEMLITVAVLSVESIFYDPREKREEARTSKNHFASVEGDHLTYLSVYRESDEFLEKRK 578
Query: 588 --NSWRN-NKFSNAWCYENFVQIRTLKRAQ 508
S N +K WC EN+V R+LK A+
Sbjct: 579 AAGSGNNIDKIMKKWCKENYVNSRSLKHAR 608
>At5g14900.1 68418.m01748 helicase associated (HA2)
domain-containing protein similar to SP|P53131 Pre-mRNA
splicing factor RNA helicase PRP43 (Helicase JA1)
{Saccharomyces cerevisiae}; contains Pfam profile
PF04408: Helicase associated domain (HA2)
Length = 301
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Frame = -2
Query: 523 VEAGPDVRKQLLGIMDRHKLDVVSAGKNT----VRIQKTICSGFFRNAAKKDPQEGYRTL 356
+++ VR+QL+ IM R ++ + S N+ V I+K + +G+F A + Y T
Sbjct: 152 MKSAVSVREQLVRIMLRFQIKLCSPDFNSRDYYVNIRKALLAGYFMQVAHLERTGHYLTF 211
Query: 355 --VDSQVVYIHPSSALFNRQPEWVIYHELVQTTK 260
D QVV++HPS+ L + +PEWV+Y+E V T++
Sbjct: 212 RDKDDQVVHLHPSNCL-DHKPEWVVYNEYVFTSR 244
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXK-FNQPEGDHLTLLAVYNSWRNNKFSN 559
CS+EIL+I +MLSV N F RP F +GDHLTLL +++++ N
Sbjct: 80 CSNEILSISAMLSVPNCFIRPRGEAQKAADEAKSSFAHIDGDHLTLLNLFHAFLQNNQDP 139
Query: 558 AWCYENFVQIRTLKRA 511
WC F+ R +K A
Sbjct: 140 NWCCTKFINYRAMKSA 155
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Frame = -2
Query: 508 DVRKQLLGIMDR---HKLDVVSAGKNTV------RIQKTICSGFFRNAAKKDPQE-GYRT 359
DVR+QL IM + +L+V + G+ + +++K +C G A++ + GYRT
Sbjct: 525 DVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCVGNANQIAERMLRHNGYRT 584
Query: 358 L-VDSQVVYIHPSSALF----NRQPEWVIYHELVQTTK 260
L SQ+V +HPSS L P +V+YHEL+ TT+
Sbjct: 585 LSFQSQLVQVHPSSVLSADNDGMMPNYVVYHELISTTR 622
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFY----RPXXXXXXXXXXXXKFN-QPEGDHLTLLAVYNSWRNN 571
C + LT+V+MLS + +P N GDH+ LL ++ SW
Sbjct: 444 CLSQALTVVAMLSAETTLLPARSKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRT 503
Query: 570 KFSNAWCYENFVQIR 526
+ WC EN +Q+R
Sbjct: 504 NYDPVWCKENGMQVR 518
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPEGDHLTLLAVYNSWRNNKFSNA 556
C D ILT+ + LSV++ F P +F++ DHL L+ Y W+ + +A
Sbjct: 724 CLDPILTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESA 783
Query: 555 ---WCYENFVQIRTLK 517
+C++NF+ I++L+
Sbjct: 784 VYDYCWKNFLSIQSLR 799
>At1g48650.1 68414.m05445 helicase domain-containing protein contains
similarity to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain, PF00035: Double-stranded RNA
binding motif
Length = 1197
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = -3
Query: 735 CSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPE-GDHLTLLAVYNSWRNNKFSN 559
C D ++T+V+ LSV++ F P KF+ + DHLTL+ YN W++ + ++
Sbjct: 805 CLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTH 864
Query: 558 A---WCYENFVQIRTLK 517
+ +C++NF+ +TLK
Sbjct: 865 SGYDYCWKNFLSSQTLK 881
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = -3
Query: 738 QCSDEILTIVSMLSVQNVFYRPXXXXXXXXXXXXKFNQPE-GDHLTLLAVYNSWRNNKFS 562
+C D ILTIVS LSV++ F P +F+ + DH+ L+ + W++ +
Sbjct: 186 RCFDPILTIVSGLSVRDPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAERE 245
Query: 561 NA---WCYENFVQIRTLK 517
+ +C+ NF+ +TL+
Sbjct: 246 GSAYEFCWRNFLSAQTLQ 263
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 424 KTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTK 260
+ IC+G+ A+K Y+ + V++H S+L N PE ++Y EL+ T +
Sbjct: 1010 EAICAGWADRVARKTRATEYQACAVQEPVFLHRWSSLINSAPELLVYSELLLTNR 1064
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 633 FNQPEGDHLTLLAVYNSWRN--NKFSNAWCYENFVQIRTLKRAQ 508
F GD TLL+VY W + + N WC+EN + ++++R +
Sbjct: 781 FCNQNGDLFTLLSVYKEWASLPRERRNKWCWENSLNAKSMRRCE 824
Score = 34.7 bits (76), Expect = 0.065
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 376 QEGYRTLVDSQVVYIHPSSAL--FNRQPEWVIYHELV 272
Q GY + Q V +HPS +L F ++P WV++ EL+
Sbjct: 880 QLGYEVALTGQQVQLHPSCSLLAFGQKPSWVVFGELL 916
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -2
Query: 376 QEGYRTLVDSQVVYIHPSSAL--FNRQPEWVIYHELV 272
Q GY + SQ V +HPS +L F ++P WV++ EL+
Sbjct: 877 QLGYEVALTSQQVQLHPSCSLLAFGQKPSWVVFGELL 913
Score = 35.9 bits (79), Expect = 0.028
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 633 FNQPEGDHLTLLAVYNSWRN--NKFSNAWCYENFVQIRTLKRAQ 508
F GD TLL+VY W + N WC+EN + ++++R +
Sbjct: 778 FCNDNGDLFTLLSVYKEWASLPRDRRNKWCWENSLNAKSMRRCE 821
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 193 NSRTQQNSLNLRRTRDWNRCTINMRSRTLGGYRESDAE-EISG 68
NSR +N +RTR+W+ N + R YR + E+ G
Sbjct: 147 NSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRG 189
>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
[Homo sapiens] GI:9896486; contains Pfam profile
PF00627: UBA/TS-N domain, PF03556: Domain of unknown
function (DUF298)
Length = 250
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 224 WLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEP 114
W +E A F +S P S + +RLE LYN+Y++P
Sbjct: 35 WHLEAAFDVF-YSQPQPRSNAAEVRRLEELYNRYKDP 70
>At5g22320.1 68418.m02604 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 452
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -1
Query: 275 STDYERVMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYN 129
S E+V++E T DP + E +D + LSKFK ++L+ +N
Sbjct: 3 SLTVEQVLKEKKTNDPDSVKELNLGHKALTDVSCLSKFKNLEKLDLRFN 51
>At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein
contains Pfam profile PF04410: Gar1 protein RNA binding
region
Length = 189
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 688 RFL-SAEGQAGACRPEEGQVQPAGRGPPDATG 596
RFL +GQ+G EG+V P GRGPP G
Sbjct: 129 RFLPQPKGQSGG--RGEGRVPPRGRGPPRGRG 158
>At3g31370.1 68416.m03999 hypothetical protein contains similarity
to hypothetical proteins
Length = 272
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 615 DHLTLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQ 508
D+ T L + + WR F WC N + + +R Q
Sbjct: 123 DYKTKLTLEHVWREVMFDQKWCSSNALNVPAKQRKQ 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,511
Number of Sequences: 28952
Number of extensions: 293268
Number of successful extensions: 734
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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