Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0608
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   5.3  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   5.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.0  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.2  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   9.2  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   9.2  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 240 SQFS*RTLD*QPHRKQLPVHLIYHVQSDLPQYSWALC 130
           S  S  + D  P  K+LP HL+      + QYS A C
Sbjct: 408 SSSSESSTDGNPQEKKLPEHLVKRKSRLVRQYSLAWC 444


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 409 TFCLLYISNLNPM*LQCSYGFPILQYCELLHIY 311
           T  +  IS+L+P  L+CSY         L+H+Y
Sbjct: 89  TIAIRIISSLDPHGLRCSYAIQAKLLNWLIHVY 121


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 329  TILKNRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIKGKALSRSEAAHRKNEIV 493
            T+ ++  S  +      + RD ++ + +  PP+I +I  +  S  +  H K+ +V
Sbjct: 958  TLYRHNDSDASAYVSSARRRDFKEEKIESAPPIINDIDSEIASLKKRIHEKSLVV 1012


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 302 QFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQ 397
           + ++  Q+FT LKN K+I +L+S  +   D Q
Sbjct: 640 KLKLKYQQFTTLKNLKNIDSLESLELGHEDEQ 671


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/74 (20%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +2

Query: 347 KSIGTLQSHRIQIRDIQQTESKIKPPL-IEEIKGKALSRSEAAHRKNEIVFRLRRSHQQG 523
           +++ + +++  +I + +  +++I+ P  +EE   +++  SE  + K++      +SH   
Sbjct: 146 QNVDSGKTNHEEIHESRHLQTEIEEPSGLEESSEESVLYSEEFYEKSDEEEDEEKSHSAE 205

Query: 524 KLSIC*QNLKYQLQ 565
           +L    +++ YQLQ
Sbjct: 206 ELEFGEEDIMYQLQ 219


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 290 QDKYQFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQQTESK 412
           Q K++    ++KF      +S+   +  R+ + DI+Q E+K
Sbjct: 473 QSKFEAVNQLKKFLGSLGNRSLNAREPLRVTLEDIEQIETK 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,467
Number of Sequences: 5004
Number of extensions: 67831
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)