Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0608
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0096 - 26408159-26408911,26409012-26409440 30 1.8
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 30 2.4
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 30 2.4
02_05_1214 + 34976814-34979813 29 4.1
02_02_0396 - 9756993-9757540,9757590-9757809,9757929-9758046,975... 29 5.5
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 28 7.2
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 28 9.6
07_01_0432 + 3290546-3291911,3291972-3291988 28 9.6
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 28 9.6
>01_06_0096 - 26408159-26408911,26409012-26409440
Length = 393
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 15 PDNKKVFVNICQTDAIPCP*DITNDELMYILS 110
PD K+V N C +P P D ND L+++LS
Sbjct: 361 PDEKRVLYNDCIHWCLPGPVDAWNDMLLHMLS 392
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 529 EYLLAEFKIPASVEVKDLNLEVGEDRLVLDSKGVYEP 639
EY L K P + E++ + + GEDR DSK ++EP
Sbjct: 405 EYELFPLKYPPNDELQ-YDTDFGEDRTEADSKAIHEP 440
>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 529 EYLLAEFKIPASVEVKDLNLEVGEDRLVLDSKGVYEP 639
EY L K P + E++ + + GEDR DSK ++EP
Sbjct: 1063 EYELFPLKYPPNDELQ-YDTDFGEDRTEADSKAIHEP 1098
>02_05_1214 + 34976814-34979813
Length = 999
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 156 GRTEHDKSGAPATAYDVAVNPEFFKKIEKDELFKHFFSPLCLKDYRIN 299
G+ +G PA +V P+ F +EK LF H + LK YR N
Sbjct: 101 GKVRVPAAGVPAPGEEVV--PQLFT-LEKRSLFSHIRGEITLKIYRTN 145
>02_02_0396 -
9756993-9757540,9757590-9757809,9757929-9758046,
9758156-9758431,9758569-9758609
Length = 400
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 60 IPCP*DITNDELMYILSSGDPSSYRVPMSIGEGRTEHDKSGAPATAYDV 206
IP +T+ M I + G P P G G+ + DKS P YD+
Sbjct: 215 IPYMASVTDRFGMPIQAEGAPRKIADPFDFGGGQIDPDKSIDPGLVYDI 263
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 78 ITNDELMYILSSGDPSSYRVPMSIGEGRTEHDKSGAPATAYDV 206
+T++ M IL+ G P P G G +++ P YD+
Sbjct: 503 VTDERGMPILAEGVPRKIADPFDYGSGNINPNRAADPGLIYDI 545
>09_02_0469 -
9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 371 HRIQIRDIQQTESKIKPPLIEEIKG 445
H++Q+ D+ +TE PP I +KG
Sbjct: 566 HKLQMLDLSETELTELPPFISNLKG 590
>07_01_0432 + 3290546-3291911,3291972-3291988
Length = 460
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 408 VKSNLHLLRKLKAKHCQEVKQLIERMKLCLDLEEATNRGN-*VFVSRI*NTSFSRGKRFE 584
V SN L+ L + H E+ +L+E+ L LE+A +GN +F R N + R E
Sbjct: 50 VNSNSVLVALLDS-HYTELAELVEKALLLQTLEDAVGKGNVTIFAPR--NEALERDLDPE 106
Query: 585 FR 590
FR
Sbjct: 107 FR 108
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 145 VLGKVGLNMINQVHRQLLTMWLSIQSSSRKLR 240
V G +GL ++ QVHR L+ +W + R LR
Sbjct: 2 VYGLLGLALLWQVHRLLVRLWWQPRRLERALR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,611
Number of Sequences: 37544
Number of extensions: 391913
Number of successful extensions: 918
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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