Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0608
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   6e-20
SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)                41   0.001
SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)                    30   2.4  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     30   2.4  
SB_40067| Best HMM Match : Nop17p (HMM E-Value=1.5e-13)                29   3.2  
SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)                  29   5.6  
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)                      28   9.8  
SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)                   28   9.8  

>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 43/81 (53%), Positives = 55/81 (67%)
 Frame = +3

Query: 24  KKVFVNICQTDAIPCP*DITNDELMYILSSGDPSSYRVPMSIGEGRTEHDKSGAPATAYD 203
           KKVFVNIC ++ IP   DI+  EL  IL S DP  YRVP+S+GE   E DKSG   T YD
Sbjct: 56  KKVFVNICTSEHIPKAKDISEQELAEILDSEDPMRYRVPLSLGEPHAEMDKSGNGCTVYD 115

Query: 204 VAVNPEFFKKIEKDELFKHFF 266
           + +NP F KK++++  FK+FF
Sbjct: 116 IVINPTFLKKVQENTFFKNFF 136



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +1

Query: 508 KPPTGEIEYLLAEFKIPASVEVKDLNLEVGEDRLVLDSKGVYEPVDFFLPCSVDQDIIDA 687
           +P   + E+++ E  +P    +KD  L+VGEDRL+L        +D  LP +VD +   A
Sbjct: 218 EPSDDKPEFIVLEISLPGLKSIKDTALDVGEDRLLLHVDPNRYHLDLDLPHNVDVETCGA 277

Query: 688 QLDR 699
           Q ++
Sbjct: 278 QFNK 281



 Score = 31.9 bits (69), Expect = 0.60
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +2

Query: 281 EGLQDKYQFEIDMQKFTILKNRKSIGTLQSHRIQ 382
           +GL++KY  ++D + ++ILKN+K +G  Q H ++
Sbjct: 142 QGLEEKYGLDLD-RSWSILKNKKYMGKPQMHYVR 174


>SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)
          Length = 175

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +1

Query: 508 KPPTGEIEYLLAEFKIPASVEVKDLNLEVGEDRLVLDSKGVYEPVDFFLPCSVDQDIIDA 687
           +P   + E+++ E  +P    +KD  L+VGEDRL+L        +D  LP +VD +   A
Sbjct: 109 EPSDDKPEFIVLEISLPGLKSIKDTALDVGEDRLLLHVDPNRYHLDLDLPHNVDVETCGA 168

Query: 688 QLDR 699
           Q ++
Sbjct: 169 QFNK 172



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 192 TAYDVAVNPEFFKKIEKDELFKHFF 266
           T YD+ +NP F KK++++  FK+FF
Sbjct: 3   TVYDIVINPTFLKKVQENTFFKNFF 27



 Score = 31.9 bits (69), Expect = 0.60
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +2

Query: 281 EGLQDKYQFEIDMQKFTILKNRKSIGTLQSHRIQ 382
           +GL++KY  ++D + ++ILKN+K +G  Q H ++
Sbjct: 33  QGLEEKYGLDLD-RSWSILKNKKYMGKPQMHYVR 65


>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
          Length = 510

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 181 VHRQLLTMWLSIQSSSRKLRKMNFSNIFSHRC 276
           VH  +LT    + SSS   R+ NF+   +HRC
Sbjct: 291 VHGWILTSSAQLPSSSNPNRRENFNEFMTHRC 322


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +2

Query: 281  EGLQDKYQFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIKGKALSR 460
            E  ++    E   +    L+  K +  L+  +  + ++QQ ES ++    E+++ +A   
Sbjct: 1232 ERAKESVHSEFAQRMHAELEQAKELARLELEQEHLDNLQQLESSLEKRHAEQLRAQAKQE 1291

Query: 461  SEAAHRK 481
             E AH+K
Sbjct: 1292 LEEAHQK 1298



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +2

Query: 341  NRKSIGTLQSH-RIQIRDIQQTESKIKPPLIEEIKGKALSRSEAAHRK---NEIVFRLRR 508
            + K +  LQ++ + Q+  +QQ   K+   L  +I+   +++ EA   +   NE+V R  R
Sbjct: 1408 HNKELQELQNNLKQQLAVVQQKSDKLSEDLKVKIEEVEIAQREAKRTEEHYNELVTRYER 1467

Query: 509  SHQQGK 526
             +Q+G+
Sbjct: 1468 ENQEGQ 1473


>SB_40067| Best HMM Match : Nop17p (HMM E-Value=1.5e-13)
          Length = 287

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +3

Query: 27  KVFVNICQTDAIPCP*DITNDELMYILSSGDPSSYRVPMSIGEGRTEHDKSGAPATAYDV 206
           KV++N+C  D +P P            S  DP    +P+  G+   EH + G P    D 
Sbjct: 71  KVYINVCSWDRVPAP-----------ESEKDP----IPIMTGQ-LQEHQEKGKPYATIDA 114

Query: 207 AVNPEFFKKIEKDELFKHFFSPLCLKDY 290
             N    ++IE  +  ++    L L DY
Sbjct: 115 IFNTTTLQQIEYKQDHRNLLVHLAL-DY 141


>SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)
          Length = 901

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 302 QFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIKGKALSRSEA 469
           Q E+D ++F +  N   +    S R   +DIQ ++ +IK  + E I+     R+++
Sbjct: 48  QKELDQERFAMCGNLSDVELTCSSRTVRQDIQGSQPEIKAEIFEIIQSVEEERADS 103


>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 362 LQSHRIQIRDIQQTESKIKPPLIEEIKGKALSRSEAAHRKNEIVFRLRRSHQQ 520
           L+ +     + +  ESK+K   I      ALS+SE + RKNE + + +  HQQ
Sbjct: 136 LRKYHTMFGESKTAESKLKSTEI------ALSKSEESGRKNEKMTKQKEKHQQ 182


>SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)
          Length = 562

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 380 QIRDIQQTESKIKPPLIEEIKGKALSRSEAAHR 478
           Q+RD+Q   +K    +    K K LSR  AAHR
Sbjct: 310 QVRDLQDELTKTGTDIKHTKKSKTLSRLAAAHR 342


>SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)
          Length = 570

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 24  KKVFVNICQTDAIPCP*DITNDELMYIL 107
           KK+  NI QT+ + CP + T +E +Y L
Sbjct: 171 KKLLENIKQTEDVQCPENATANEAIYAL 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,698,853
Number of Sequences: 59808
Number of extensions: 452054
Number of successful extensions: 1099
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)