Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0608
         (779 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    25   2.6  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    25   2.6  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    25   3.5  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.0  

>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 678 NILVNTTWQKEVYWFINSF 622
           N   +  W KE YW +N+F
Sbjct: 314 NFDCSAMWLKEPYWIVNAF 332


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 678 NILVNTTWQKEVYWFINSF 622
           N   +  W KE YW +N+F
Sbjct: 345 NFDCSAMWLKEPYWIVNAF 363


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 177 IYHVQSDLPQYSWALCSWRDP 115
           I  ++S L  Y W   SW DP
Sbjct: 76  INEIKSTLSVYGWMKFSWNDP 96


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +1

Query: 163 LNMINQVHRQLLTMWLSIQSSSRKLRKMNFSNIFSHR 273
           +  +NQ +++  T  +S++ +  KL  +  +N+F  +
Sbjct: 804 IRRLNQENKEAFTSRMSLEVTKNKLENLLTNNLFRRK 840


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,626
Number of Sequences: 2352
Number of extensions: 16684
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)