Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0608
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53330.1 68418.m06628 expressed protein                             30   1.5  
At1g33820.1 68414.m04185 hypothetical protein                          30   1.5  
At5g28430.1 68418.m03453 hypothetical protein                          29   3.5  
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    29   3.5  
At3g60930.1 68416.m06816 expressed protein                             29   4.6  
At4g06603.1 68417.m01028 expressed protein                             28   6.0  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    28   6.0  
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR...    28   8.0  
At2g17090.1 68415.m01973 protein kinase family protein similar t...    28   8.0  

>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
 Frame = +3

Query: 99  YILSSGDPS----SYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKKIEKDELFKHFF 266
           Y   SG PS     Y  P +     + H   G P         P+FF   E++  F+H  
Sbjct: 5   YRNKSGGPSYPRPMYGPPSTSPSPSSNHPMYGYPKIGQQTGPGPQFFSPPERNSSFQHNT 64

Query: 267 SPLCLKDYRINI 302
           SP      R+N+
Sbjct: 65  SPSSGIGIRVNL 76


>At1g33820.1 68414.m04185 hypothetical protein
          Length = 182

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +2

Query: 287 LQDKYQFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIKGKALSRSE 466
           L+D  Q + D Q   ++  + S  T +    Q++DI Q + ++   ++E++   AL +SE
Sbjct: 102 LKDTLQLK-DTQTINMM-TQMSAETYERQMRQMKDIIQQKDRLTMEMMEKMMENALKQSE 159

Query: 467 AAHRK 481
            AH +
Sbjct: 160 IAHER 164


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 392 IQQTESKIKPPLIEEIKGKALSRSEAAHRKNEIVFRLRRSHQQGKLSIC*QNLK 553
           + + ES+I+   IE  K +ALS + AA  + E V R+   +++  + +  QNLK
Sbjct: 275 LAEAESRIQA--IEREKNEALSEAAAAKLEREEVERMAYVNKENAIKMAEQNLK 326


>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 634

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 93  LMYILSSGDPSSYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKKIEKDELFKHF 263
           L+Y++S+G   + R    + +    HDKS     AY++  +  +F +++   L   F
Sbjct: 350 LVYMVSTGKLPAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISF 406


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 425 LIEEIKG-KALSRSEAAHRKNEIVFRLRRSHQQGKL 529
           L+E I G KAL    +AH+K  ++  +++ HQ+GKL
Sbjct: 494 LLELITGQKALDFGRSAHQKGVMLDWVKKLHQEGKL 529


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 392 IQQTESKIKPPLIEEIKGKALSRSEAAHRKNEIVFRLRRSHQQGKLSIC*QNLK 553
           + + ES+I+   IE  K +ALS + AA  + E V R    +++  + +  QNLK
Sbjct: 587 LAEAESRIQA--IEREKNEALSEAAAAKLEKEEVERTAHVNKENAIKMAEQNLK 638


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 392 IQQTESKIKPPLIEEIKGKALSRSEAAHRKNEIVFRLRRSHQQGKLSIC*QNLK 553
           + + ES+I+   IE  K +ALS + AA  + E + R    +++  + +  QNLK
Sbjct: 575 LAEAESRIQA--IEREKNEALSEAAAAKLEKEEIERTAHVNKENAIKMAEQNLK 626


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 293  DKYQFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIK 442
            + + FE+  + F + +   S GT+ S + Q++D++ T  + +  L+EE K
Sbjct: 1257 ESHTFELKQKDFQVAE---STGTILSLKQQVQDLEATCKEFRSKLLEEEK 1303


>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1981

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 417  NLHLLRKLKAKHCQEVKQLIERMKLCLDLEEATNRGN 527
            NLH L+ +  K C +++ +   + L LD+++  NR N
Sbjct: 1936 NLHKLQNVTLKGCSKLEVVPTNINLILDVKKYKNREN 1972


>At2g17090.1 68415.m01973 protein kinase family protein similar to
           Arabidopsis thaliana APK1A [SP|Q06548], APK1B
           [SP|P46573]; contains Pfam profile: PF00069 Protein
           kinase domain
          Length = 465

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 425 LIEEIKGKALSRSEAA---HRKNEIVFRLRRSHQQGKLSIC*QNLKYQL 562
           L+  + GK +  S A    HRKN  VF+L   + +GK SI   N+ Y+L
Sbjct: 220 LVNLLSGKQIPPSHAPEMIHRKN--VFKLMDPYLKGKFSIDEANVVYKL 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,865
Number of Sequences: 28952
Number of extensions: 335294
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)