Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0607
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   2.7  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   2.7  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    27   3.6  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   4.8  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  

>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = -3

Query: 550 MYWCWT---VYIHNCNRSVAIGTNCTDSDGDKFIWAALSGT--WAP-ETWLTEWSKYLAD 389
           M W W    V++      +A   +   + G  +  AA+     W P   WLT WS YL  
Sbjct: 76  MVWGWLIAMVFVQCVANGMAELCSSMPTSGGLYYAAAVLAPKGWGPFAAWLTGWSNYLVQ 135

Query: 388 LGG 380
           + G
Sbjct: 136 VTG 138


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 182 PNIDHHRVKRCCEYEKSRKRRSPAAEHQDRFITTNTRVY 298
           P ID H      EY +S KR   + E   RFI    R Y
Sbjct: 268 PQIDPHSSSLADEYRESNKRLQESKESCARFILDCDRKY 306


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -3

Query: 550 MYWCWTV---YIHNCNRSVAIGTNCTDSDGDKFIWAALSGT--WAP-ETWLTEWSKYLAD 389
           + W W +   ++   + S+A   +   + G  +  AA+     W P  +W+T WS Y+ +
Sbjct: 100 LLWAWLIAMFFLICVSMSMAEICSAMPTSGGLYYAAAVFAPKGWGPLASWITGWSNYIGN 159

Query: 388 LGG 380
           + G
Sbjct: 160 IIG 162


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = -3

Query: 436 WAP-ETWLTEWSKYLADLGG 380
           W P   W T WS Y+A L G
Sbjct: 138 WGPLAAWFTGWSNYIAQLVG 157


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  STNRGTKRKMSTSPTTTMMRATGRKEKCMTPT*ITI-ESNVAVN 221
           STN      + T+PTTT + +T       TP    I  SN +VN
Sbjct: 145 STNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSVN 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,608
Number of Sequences: 5004
Number of extensions: 54872
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)