Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0607
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0195 - 15509412-15509580,15510136-15510467,15510494-155109... 30 2.2
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648... 29 3.8
11_01_0796 - 7000747-7001193 29 5.0
10_08_0600 - 19098312-19099439 29 5.0
12_01_0259 - 1905291-1905393,1905536-1905672,1905787-1905893,190... 28 6.6
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 28 6.6
01_05_0406 + 21875376-21875451,21875570-21875610,21876245-218763... 28 6.6
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 8.7
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 28 8.7
>09_04_0195 -
15509412-15509580,15510136-15510467,15510494-15510900,
15511467-15511581,15512711-15514044,15514558-15514819
Length = 872
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 214 ATFDSMVIYVGVIHFSFLPVARIIVVVGLVDIFLFVP 104
A+F+ +I GV+ S L VA II+ L +IFL P
Sbjct: 794 ASFEGPIILTGVVSTSSLLVALIILAKQLGEIFLLCP 830
>02_02_0497 +
10961079-10963824,10964182-10964282,10964759-10964800,
10966918-10966986
Length = 985
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 443 RNMGTRNVVNGMVQISCGLRRHCV 372
R++ RN+V G ISC L+ +CV
Sbjct: 565 RSLAGRNIVTGNTMISCYLKNNCV 588
>11_01_0796 - 7000747-7001193
Length = 148
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 181 PQHRSPSSQXXXXXXXXXXXXXASCRAPRQVHHYEYTSLQMKGWVR 318
P RSPSS C+ P HHY YT LQ +++
Sbjct: 102 PPPRSPSSPCIAPPSGAAKGGAGGCQHPLSQHHYHYT-LQFLHYIK 146
>10_08_0600 - 19098312-19099439
Length = 375
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 390 SARYLDHSVNHVSGAHVPLKAA 455
+AR+LDH+ ++ AH+PL AA
Sbjct: 21 AARHLDHTFEKLAAAHLPLVAA 42
>12_01_0259 -
1905291-1905393,1905536-1905672,1905787-1905893,
1906012-1906090,1906256-1906342,1906987-1907265,
1907401-1908114
Length = 501
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 243 ARQLQSTKTGSSLRIHEFTDERLG-PASPP 329
AR L T+ + R+H T RLG PASPP
Sbjct: 125 ARSLLLTRGAAHKRLHSLTLTRLGRPASPP 154
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 243 ARQLQSTKTGSSLRIHEFTDERLG-PASPP 329
AR L T+ + R+H T RLG PASPP
Sbjct: 125 ARSLLLTRGAAHKRLHSLTLTRLGRPASPP 154
>01_05_0406 +
21875376-21875451,21875570-21875610,21876245-21876314,
21876410-21876558,21876671-21876766,21876863-21876933,
21877119-21877267,21877400-21877463,21877547-21877631,
21878079-21878139,21879005-21879144,21879266-21879559
Length = 431
Score = 28.3 bits (60), Expect = 6.6
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +3
Query: 90 SSTNRGTKRKMSTSPTTTMMRATGRKEKCMTPT*ITIESNVAVNMKSQENDARQLQSTKT 269
S+T G + S PT + TG ++ + +++ + + + + L +
Sbjct: 287 SATEEGRRSGWSDDPTRRQVPPTGINAGSLSKQKSPVRPDMSTSKDALFSSSTML-GRSS 345
Query: 270 GSSLR--IHEFTDERLGPASPPYEEMLAASADHYQRYAVPPKSARYLDHS--VNHVSGAH 437
GS R + + + A P AS +QR A P +S++ LD+S + SG H
Sbjct: 346 GSLRRPVVSSSRELQSSEAEPSRSRTPDASPGTFQRSAPPRRSSQMLDYSDPRHSSSGRH 405
Query: 438 VPLKAAQINLSPSESVQFVPIATDRL 515
K + + + + F A DR+
Sbjct: 406 AANKNYESTIRGIQGLNF--DANDRI 429
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 179 DPNIDHHRVKRCCEYEKSRKR--RSPAAEHQD 268
D +I+HHR K+ + K R R RSP A+ D
Sbjct: 912 DSSIEHHRSKKRKSHSKHRTRRSRSPYADSSD 943
>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 100 FVDDLSHRDRHQQQPDYRTHLALSMRTKSAQKR 2
FVDD+ + R D R HL++ MRTK + R
Sbjct: 1368 FVDDVGYEQRAVS--DLRNHLSVLMRTKVSNSR 1398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,687
Number of Sequences: 37544
Number of extensions: 390509
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -