Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0607
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              33   0.18 
SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)                 30   2.2  
SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   3.9  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   28   6.7  
SB_19635| Best HMM Match : Met_10 (HMM E-Value=3.4e-13)                28   8.9  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            28   8.9  

>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 346

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 203 VKRCCEYEKSRKRRSPAAEHQDRFITTNT 289
           VKRC E EK RKRR   A H +R I   T
Sbjct: 302 VKRCFELEKIRKRRHANARHNERCIKCRT 330


>SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 400 IWTIPLTTFLVPMFRSKQPR*TYLHQNQYNSFLLLLT 510
           +WTIP+   LVP F   QP       NQ N  LL+ +
Sbjct: 149 VWTIPMVITLVPAFWYSQPLNIKKLANQINQGLLVFS 185


>SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 PNIDHHRVKRCCEYEKSRKRRSPAAEHQ 265
           P ++    K CC +++ +K++ P A H+
Sbjct: 340 PEVEIEETKCCCFFKRKKKKKQPVARHK 367


>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1264

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 229 LFIFTATFDSMVIYVGVIHFSFLPVARIIVVVGLVDIFL 113
           +FI   TF ++ +++GVI  +F  + + +  VG +D+FL
Sbjct: 676 VFIILGTFFTLNLFIGVIIDNFNQLKQQMEAVGSMDVFL 714


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 385 LSPQDIWTIPLTTFLVPMFRSKQPR*TYLHQNQYNSFLLLLTDYSCECRRSSTNTFRTFN 564
           L P+ + + P +    P   S  P  T + ++  N  +L +   S EC  SST T    N
Sbjct: 625 LPPRSLKSSPRSRDPSPPIASSSPGSTNIGESFANEMILFIKSCSAECFDSSTVTTTDVN 684

Query: 565 TI 570
           +I
Sbjct: 685 SI 686


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 541 CWTVYIHNCNRSVAIGTNCTDSDGDKFIWAALSGTWAPETWLTEWSK 401
           C+    + CN+  A   N T  +G   IW  L   WA   W   W +
Sbjct: 257 CFYGVCYYCNKEEAACANKTSMEGSMTIW--LPQGWALRKWRHPWQR 301


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = +3

Query: 126 TSPTTTMMRATGRKEKCMTPT*ITIESNVAVNMKSQENDARQLQSTKTGSSLRIHEFTDE 305
           TS  T     +  + K   PT I   ++ A+   S++    Q    K    + + +  DE
Sbjct: 497 TSSKTETPTVSSSETKTTRPTKIRDTASEALQPISEDQPEVQPSLAKIKLHVEVQKMADE 556

Query: 306 RLGPASPPYEEMLAASAD 359
           +L    PP EE+  +  D
Sbjct: 557 KLMTEKPPKEELHPSRED 574


>SB_19635| Best HMM Match : Met_10 (HMM E-Value=3.4e-13)
          Length = 564

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 195 TIESNVAVNMKSQENDARQLQSTKTGSSLRIH 290
           T E++  VN     ND   LQ T TG + RIH
Sbjct: 303 TEENSSVVNSDLLYNDVTDLQDTPTGYTYRIH 334


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 75  SRWLRSSTNRGTKRKMSTSPTTTMMRATGRKEKCMTP 185
           S W  +++  G +    T PT  +  A GRK +  TP
Sbjct: 451 SSWTETASGTGREEFKRTLPTAALPTAMGRKREVETP 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,312,237
Number of Sequences: 59808
Number of extensions: 432227
Number of successful extensions: 1368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)