Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0607
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51520.1 68416.m05642 diacylglycerol acyltransferase family c...    31   0.59 
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00...    30   1.8  
At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12) ...    29   4.2  
At2g07771.2 68415.m00888 cytochrome c biogenesis protein-related       28   5.5  
At2g07681.1 68415.m00923 cytochrome c biogenesis protein, putati...    28   5.5  

>At3g51520.1 68416.m05642 diacylglycerol acyltransferase family
           contains Pfam PF03982: Diacylglycerol acyltransferase
          Length = 314

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 9/42 (21%)
 Frame = -3

Query: 202 SMVIYVGVIHFS---------FLPVARIIVVVGLVDIFLFVP 104
           +M I++G IHF+         FLP +  ++V+GL+ +F+F+P
Sbjct: 21  AMAIWLGAIHFNVALVLCSLIFLPPSLSLMVLGLLSLFIFIP 62


>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 492

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -3

Query: 541 CWTVYIHNCNRSVAIGTNCTDSDGDKFIWAALSGTWAPETWLTEW 407
           CW V  +N    V    N    DGD F +   +  W    W+ EW
Sbjct: 288 CWNVAAYNGKCLVLWQMNKVACDGDVFGYDLRANKWEVIGWIPEW 332


>At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12)
           Asp48; almost identical to cucumisin-like serine
           protease (ARA12) GI:3176874 from [Arabidopsis thaliana]
          Length = 757

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 421 TFLVPMFRSKQPR*TYLHQNQYNSFLLLLTDYSCECRRSSTNTFRTFNT 567
           T++V M +S+ P    LH N Y+S L  ++D S E   +  N    F+T
Sbjct: 31  TYIVHMAKSQMPSSFDLHSNWYDSSLRSISD-SAELLYTYENAIHGFST 78


>At2g07771.2 68415.m00888 cytochrome c biogenesis protein-related
          Length = 256

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 217 TATFDSMVIYVGVIHFSFLPV--ARIIVVVGLVDI 119
           T+ F S +IY+G + F  LPV  A I +  G +DI
Sbjct: 127 TSVFISFLIYLGALRFQKLPVEPASISIRAGPIDI 161


>At2g07681.1 68415.m00923 cytochrome c biogenesis protein, putative
           strong similarity to cytochrome c biogenesis protein
           [Pisum sativum] GI:4850219, ABC-type heme transporter
           subunit [Oryza sativa (japonica cultivar-group)]
           GI:1395188; contains Pfam profile PF01578: Cytochrome C
           assembly protein
          Length = 256

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 217 TATFDSMVIYVGVIHFSFLPV--ARIIVVVGLVDI 119
           T+ F S +IY+G + F  LPV  A I +  G +DI
Sbjct: 127 TSVFISFLIYLGALRFQKLPVEPASISIRAGPIDI 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,816
Number of Sequences: 28952
Number of extensions: 298492
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)