Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0606
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08020.1 68416.m00979 PHD finger protein-related contains low...    30   1.8  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    28   5.5  
At4g15715.1 68417.m02392 hypothetical protein                          28   7.3  

>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 606 EGKLQYRCYYCLDVLYQLKDSH*DPRKKIFKNR 508
           +GKLQY+C  C    YQ+KD   D  ++++K +
Sbjct: 329 DGKLQYKCATCRGECYQVKDLQ-DAVQELWKKK 360


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 606 EGKLQYRCYYCLDVLYQLKDSH*DPRKKIFKNR 508
           +G LQY+C  C    YQ+KD   D  ++I+K +
Sbjct: 342 DGNLQYKCSTCRGESYQVKDLE-DAVQEIWKRK 373


>At4g15715.1 68417.m02392 hypothetical protein
          Length = 118

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 70  IRFLIKRILFVYGKLFYVTFWVSQY*NAN 156
           ++++   +L V G LFY+TFW     + N
Sbjct: 61  VKYVSANVLGVQGFLFYITFWAKDLSSPN 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,327
Number of Sequences: 28952
Number of extensions: 257935
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)