Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0605
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 633 KTRLSKLSWS*TKIIIRKYCNKFIY 707
           +T  SKLS S +K +++KY +K ++
Sbjct: 11  ETGFSKLSSSDSKSLLKKYLSKDVF 35


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 110 MCLWPLTMPEENHWLVHD*LSLP 178
           MC    T P++ H L H+ L  P
Sbjct: 633 MCTSTTTSPDKEHVLAHNDLMSP 655


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 342 TFIFHPSKC 368
           TF+ HPS+C
Sbjct: 13  TFLLHPSRC 21


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 342 TFIFHPSKC 368
           TF+ HPS+C
Sbjct: 13  TFLLHPSRC 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,311
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)