Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0604
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    40   5e-04
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    29   0.66 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +1

Query: 22  SLVVLGEGFHNYHHTFPWDYK 84
           +LV LGEG HNYHH FP DY+
Sbjct: 275 ALVTLGEGNHNYHHAFPNDYR 295


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 187 TSVDTVLRS*AQSIFAMKSMNSLLKLRDNLQVRR 86
           TS+D +  S A  +FA  +M  LL +R  LQV R
Sbjct: 185 TSLDYIFMSAASKVFAAVNMYPLLVIRTRLQVMR 218


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 336 PLGLFVNQ-PLNVIILPDKIYLTNVD*QLWLFRDYLHQLFFFELICFLFPYFKQNIILFV 512
           P  LF +  P+  I LP  ++L        LF  +  +LFFF +I     Y    I+LF+
Sbjct: 99  PSILFASSLPIQFIALPPTVFL--------LFFKFYSRLFFFRIIPSHILYNSFRIVLFL 150

Query: 513 S 515
           S
Sbjct: 151 S 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,527
Number of Sequences: 5004
Number of extensions: 59416
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)