BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0604 (711 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 32 0.43 At2g32880.1 68415.m04031 meprin and TRAF homology domain-contain... 30 1.7 At4g04930.1 68417.m00717 fatty acid desaturase family protein si... 28 7.0 At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 28 7.0 At2g04090.1 68415.m00392 MATE efflux family protein similar to r... 28 7.0 At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1) 27 9.3 At4g15090.1 68417.m02318 far-red impaired response protein (FAR1... 27 9.3 >At3g15870.1 68416.m02007 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana] Length = 292 Score = 31.9 bits (69), Expect = 0.43 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +1 Query: 4 RRNQPVSLVVLGEGFHNYHHTFPWDYKTAELGDYPLI*ASCSLISWRRSIGLMT 165 + N V+++ LGEG+HN HH F + + L + L C LI + +IGL T Sbjct: 225 KNNWWVAILTLGEGWHNNHHAFEFSARHG-LEWWQLDITWC-LIRFLEAIGLAT 276 >At2g32880.1 68415.m04031 meprin and TRAF homology domain-containing protein / MATH domain-containing protein low similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 318 Score = 29.9 bits (64), Expect = 1.7 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +3 Query: 444 QLFFFELICFLFPYFKQNIILFVSSKRLQEQFKKNNPSFFYAKAIRREVIFNNL 605 + F+ + C Q ++ F++ +L+E+F N+ + FYA+ I EVI N L Sbjct: 101 EYFYVSVGCHNEKQPAQGVVKFITHTQLKERFLVNDKAVFYAE-ISEEVIPNFL 153 >At4g04930.1 68417.m00717 fatty acid desaturase family protein similar to D. melanogaster Des-1 protein, GenBank accession number X94180; contains Pfam profile PF00487 Fatty acid desaturase domain Length = 332 Score = 27.9 bits (59), Expect = 7.0 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 16 PVSLVVLGEGFHNYHHTFP 72 P++L+ G+HN HH FP Sbjct: 260 PLNLLTWSVGYHNEHHDFP 278 >At3g15850.1 68416.m02005 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana] Length = 371 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 4 RRNQPVSLVVLGEGFHNYHHTF 69 + N V+ + GEG+HN HH F Sbjct: 302 KNNWWVAALAFGEGWHNNHHAF 323 >At2g04090.1 68415.m00392 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 483 Score = 27.9 bits (59), Expect = 7.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 516 SKRLQEQFKKNNPSFFYAKAIRREVIFNNLFLFVCNVSKCQTLIIRCKINIF 671 S R+ + NP + R +F +FL+ + C TL+ CK NIF Sbjct: 315 STRISNELGAGNPE------VARLAVFAGIFLWFLEATICSTLLFTCK-NIF 359 >At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1) Length = 280 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +3 Query: 420 WLFRDYLHQLFFFELICFLFPYFKQNIIL 506 W + H FF +CFLF + NI L Sbjct: 121 WKMNNVPHTTFFLTHVCFLFYHVASNITL 149 >At4g15090.1 68417.m02318 far-red impaired response protein (FAR1) / far-red impaired responsive protein (FAR1) identical to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101 domain: FAR1 family Length = 768 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 531 EQFKKNNPSFFYAKAIRREVIFNNLF 608 ++ KK NP FFYA + + NLF Sbjct: 175 KRIKKENPKFFYAIDLNEDQRLRNLF 200 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,329,145 Number of Sequences: 28952 Number of extensions: 278569 Number of successful extensions: 551 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 551 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1535986264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -