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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0604
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15870.1 68416.m02007 fatty acid desaturase family protein si...    32   0.43 
At2g32880.1 68415.m04031 meprin and TRAF homology domain-contain...    30   1.7  
At4g04930.1 68417.m00717 fatty acid desaturase family protein si...    28   7.0  
At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    28   7.0  
At2g04090.1 68415.m00392 MATE efflux family protein similar to r...    28   7.0  
At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)                  27   9.3  
At4g15090.1 68417.m02318 far-red impaired response protein (FAR1...    27   9.3  

>At3g15870.1 68416.m02007 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 292

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +1

Query: 4   RRNQPVSLVVLGEGFHNYHHTFPWDYKTAELGDYPLI*ASCSLISWRRSIGLMT 165
           + N  V+++ LGEG+HN HH F +  +   L  + L    C LI +  +IGL T
Sbjct: 225 KNNWWVAILTLGEGWHNNHHAFEFSARHG-LEWWQLDITWC-LIRFLEAIGLAT 276


>At2g32880.1 68415.m04031 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 318

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 444 QLFFFELICFLFPYFKQNIILFVSSKRLQEQFKKNNPSFFYAKAIRREVIFNNL 605
           + F+  + C       Q ++ F++  +L+E+F  N+ + FYA+ I  EVI N L
Sbjct: 101 EYFYVSVGCHNEKQPAQGVVKFITHTQLKERFLVNDKAVFYAE-ISEEVIPNFL 153


>At4g04930.1 68417.m00717 fatty acid desaturase family protein
           similar to D. melanogaster Des-1 protein, GenBank
           accession number X94180; contains Pfam profile PF00487
           Fatty acid desaturase domain
          Length = 332

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 16  PVSLVVLGEGFHNYHHTFP 72
           P++L+    G+HN HH FP
Sbjct: 260 PLNLLTWSVGYHNEHHDFP 278


>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   RRNQPVSLVVLGEGFHNYHHTF 69
           + N  V+ +  GEG+HN HH F
Sbjct: 302 KNNWWVAALAFGEGWHNNHHAF 323


>At2g04090.1 68415.m00392 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 516 SKRLQEQFKKNNPSFFYAKAIRREVIFNNLFLFVCNVSKCQTLIIRCKINIF 671
           S R+  +    NP       + R  +F  +FL+    + C TL+  CK NIF
Sbjct: 315 STRISNELGAGNPE------VARLAVFAGIFLWFLEATICSTLLFTCK-NIF 359


>At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 420 WLFRDYLHQLFFFELICFLFPYFKQNIIL 506
           W   +  H  FF   +CFLF +   NI L
Sbjct: 121 WKMNNVPHTTFFLTHVCFLFYHVASNITL 149


>At4g15090.1 68417.m02318 far-red impaired response protein (FAR1) /
           far-red impaired responsive protein (FAR1) identical to
           far-red impaired response protein FAR1 [Arabidopsis
           thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101
           domain: FAR1 family
          Length = 768

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 531 EQFKKNNPSFFYAKAIRREVIFNNLF 608
           ++ KK NP FFYA  +  +    NLF
Sbjct: 175 KRIKKENPKFFYAIDLNEDQRLRNLF 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,145
Number of Sequences: 28952
Number of extensions: 278569
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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