Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0603
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    30   0.28 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.48 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.5  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    27   3.4  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   7.9  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.9  
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +3

Query: 387 ESYIPENNLEYLKLATQNKKAIIDEQLLETTSKTIPH*RNK-SDDIMSRAMLHN--KIPA 557
           E  +PE  LE+ +L   + K+I D +LL   S  + H  +    D++S     +   +P+
Sbjct: 293 EGKVPETILEFSELCLSSFKSIYDTKLLYLKSDDLQHVSDGIPTDLLSLVSKISLPPVPS 352

Query: 558 EGPT-NSNIDPSKFIEVQPKFLNSEISRQETGLDVLD 665
              +  SN+  +  IE   K + S     E G D  D
Sbjct: 353 NSSSQRSNVSLNSLIECPYKSMMSRKRPHEAGKDSYD 389


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 331 SFLNFLLKISNFILTCFDMFLSKLSKHPQHLQCTFYLYSL 212
           S  NF +  +NF ++CF+  L K+      + C FY+Y +
Sbjct: 9   SHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKI 48


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 264 LERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLE---YLKLAT 434
           LE N +   N +L+   + L+ +++L  ++S K ++ I   ES I     E   + K+A 
Sbjct: 300 LENNPTLSFNPELE---KNLKLMQELIVAESSK-TQHIVELESCIDSLKAETERWKKVAI 355

Query: 435 QNKKAIIDEQLLETTSKTIP 494
             K A IDE +   T  T+P
Sbjct: 356 NAKSAKIDEDIRLFTMTTVP 375


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
 Frame = +3

Query: 300 LDIFRRKL---RKLEQLTASKSKKKSKRIGNSESYIPENNLEYLKLATQN--KKAIIDEQ 464
           +D ++R L   R  + L+  K  +KSK + + E+YI  +  E  ++      K       
Sbjct: 359 IDYYQRSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANA 418

Query: 465 LLETTSKTIPH*RNKSD--DIMSRAMLHNKIPAEGPTNSNIDPSKFIEVQPKFLNSEISR 638
           + E T  T    R  SD     +RA  + K+ A  P     D +K IE+ P F  + + R
Sbjct: 419 IKEYTEMTK---RAPSDPRGFGNRAAAYLKVMA--PAECIRDCNKAIELDPNFAKAYV-R 472

Query: 639 QETGLDVLDD 668
           +   L +L D
Sbjct: 473 KAQALFMLKD 482


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 7   EEDNSTEQNQSDLNQPIQNNSNITKNKIVE 96
           +E N+T+QN   + +P QN  N+      E
Sbjct: 160 KESNNTQQNNQFVMEPSQNKGNVNDANFFE 189


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 258 DNLERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSK 371
           + L R   +++NM  D+F++ L+ +EQ+    + KKS+
Sbjct: 325 ETLSRAKFEEINM--DLFKKTLKPVEQVLKDSNLKKSE 360


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 366  ISFYSLKLLAVQAFLISS*KYLISY*LVSICFF 268
            I+ YSL +L +        +Y IS  L+S+CF+
Sbjct: 1003 ITAYSLSVLHLDGIKFGDTQYTISGMLMSVCFY 1035


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 288 VNMKLDIFRRKLRKLEQL-TASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAII 455
           +N KL+    KL  +E+L T+ +S   S     SES+     +  L   ++NK+A+I
Sbjct: 797 INQKLE----KLLMIERLETSDQSPTSSSNFEESESFAVSKKVLELVRISKNKEALI 849


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 70  WNCSELVDSDLIDFVQYCC 14
           W  S L D DLI ++  CC
Sbjct: 128 WCLSHLTDEDLIAYLSRCC 146


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
 Frame = -1

Query: 421 KYSKLFS-GIYDSXXXXXXXXXXXFEAVSCSSFLNFLLKISNFILTCFDMFLSKLSKHPQ 245
           KY K F  G Y             F+ VS          ++NF L   D F+  +   P 
Sbjct: 27  KYQKKFHPGGYQKLEELAFDLEPYFQVVSSIPLEKHTFLVTNFTLRGIDFFVDTIVGFPA 86

Query: 244 HLQCTFYLYSL 212
             + TF ++SL
Sbjct: 87  SPETTFKVFSL 97


>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 507 KSDDIMSRAMLHNKIPAEGPTNSNI 581
           KSDD+ +R   H  + AE  T+SN+
Sbjct: 36  KSDDVQTRKKSHIAMYAEAITHSNV 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,942
Number of Sequences: 5004
Number of extensions: 44588
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)