Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0603
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    29   4.7  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    29   4.7  
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895...    28   6.2  

>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 4   IEEDNS-TEQNQSDLNQPIQNNSNITKN 84
           IE D+   E+N  D+NQ +Q N+N T +
Sbjct: 482 IEPDHEPVEENNDDVNQAVQKNNNFTSS 509


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 4   IEEDNS-TEQNQSDLNQPIQNNSNITKN 84
           IE D+   E+N  D+NQ +Q N+N T +
Sbjct: 460 IEPDHEPVEENNDDVNQAVQKNNNFTSS 487


>06_03_0152 +
           17287133-17287490,17288541-17288734,17289349-17289557,
           17289640-17289742,17290128-17290291,17290554-17290692,
           17290908-17291078,17291162-17291298,17291445-17291759,
           17291906-17291965,17292372-17292511,17292691-17292788,
           17292875-17293387
          Length = 866

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 255 FDNLERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLE-YLKLA 431
           FD+   N+  +   K+   ++ ++K E+   SKSKK   ++ N ++    +N +   K+ 
Sbjct: 125 FDDSSNNVESKSEDKVGNSKQTIQKGERKEKSKSKKGDGKLQNVQAQTEASNGKLQSKVL 184

Query: 432 TQNKKAIIDEQLLE 473
            + K+ +  E+L E
Sbjct: 185 EEVKEELSAEELFE 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,674
Number of Sequences: 37544
Number of extensions: 229732
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)