Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0603
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 31 0.90
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 31 1.2
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 30 2.1
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 29 2.7
SB_18753| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.7) 29 3.6
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 28 8.4
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049) 28 8.4
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 478 LQKLFLTEETNLMILCRGLCYITRFQLR 561
L +FLT T M++CRG C +R LR
Sbjct: 743 LNVVFLTPRTRAMVICRGTCLPSRDMLR 770
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 249 GCFDNLERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLEYLKL 428
G D +E +K KL+ + +R+LEQLTA + R G + + ++L+L
Sbjct: 318 GYTDRIEETRAKFEEEKLNKEMQHVRELEQLTADIENRLLTRDGKHAQHEKDLEKQFLEL 377
Query: 429 ATQNKKAIIDEQLLETTSKTI-PH*RNKSDDIM 524
+ + DE L++T K + +N +DI+
Sbjct: 378 RQKLEGKYYDE--LDSTVKNLQDRYQNDLEDIL 408
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 29.9 bits (64), Expect = 2.1
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Frame = +3
Query: 297 KLDIFRRKLRKLEQLTASKSKKKSKRIG------NSESYIPENNLEYLKLATQNKKAIID 458
++D+ + K ++E+L A SK K K SE EN L Y + K +++
Sbjct: 256 EMDMLKSKADRVEKLEADASKYKDKLRDLEYLRKRSEELKEENELLY------DNKLVLE 309
Query: 459 EQLLETTSKTIPH*RNKSDDIMSRAMLHNKIPAEGPTNSNIDPSKFIEVQPKFLNSEISR 638
+QLL ++K + ++ + +H+ I E ID +K EV + I +
Sbjct: 310 QQLLGLSAKEERIEILEEENKKLKGHIHH-IAEE----RQIDQAKVKEVMEENAQLVIDK 364
Query: 639 QETGLDVL 662
QE+ +DVL
Sbjct: 365 QESSMDVL 372
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 240 RCWGCFDNLERNISKQVNMKLDIFRRKLRK-LEQLTASKSKKKSKRIGNS-ESYIPENNL 413
R G D L + ++ + +I LR+ L+ L +K +K +RI N ES ENN
Sbjct: 249 RGMGVMDTLSQATVEKQALVREIVATSLREDLQILLDNKKNRKKERIENVIESATSENNY 308
Query: 414 EYLKLATQNKK 446
+ KL+ KK
Sbjct: 309 DLNKLSKDVKK 319
>SB_18753| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.7)
Length = 389
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +3
Query: 348 SKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAIIDEQLLE--TTSKTIPH*RNKSDDI 521
++++ + R ES+IP+N + NK+ + DE+ + T S+ P R S++
Sbjct: 244 TRNESLTYRKSEEESFIPKNRSDENHEEKINKELVEDEKAPDKGTNSEDTPFKRGSSEEF 303
Query: 522 MSRAMLHNKIPAEG-PTNSNIDPSKFIEVQPKFL 620
+ + EG T+ N + K ++ + K L
Sbjct: 304 PHAKKMKVENDTEGQSTHENEEKEKEVQFEEKGL 337
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 270 RNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGN-SESYIPENNLEYLKLATQNKK 446
RN+S + + + ++ + +L +L+ + ++K IGN S I NLE ++L K
Sbjct: 1752 RNLSFEADKECEMLKEELHQLKNAQSMAEQEKEVFIGNESNGKILLRNLE-VQLENA-KH 1809
Query: 447 AIIDEQ 464
A++DEQ
Sbjct: 1810 ALLDEQ 1815
>SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 298 FILTCFDMFLSKLSKHPQHLQCTFYLY 218
F+L C MF++ LS HL+C+ LY
Sbjct: 216 FLLRCVTMFVTSLSVPGIHLECSGKLY 242
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 324 RKLEQLTASKSKKKSKRIGNSESYIPENNLEYLKLATQN-KKAIID---EQLLETTSKTI 491
+ LEQ T KSKK +K++G +++ + E+ + + + A+I + + SK I
Sbjct: 94 KHLEQETIKKSKKFNKQVGIMANFLIQEIKEHTLICMEEIRDAMIKYGLSEFAQRASKMI 153
Query: 492 PH*RNKSD 515
RN+S+
Sbjct: 154 EQVRNQSN 161
>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 336 QLTASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAIIDEQLLETTSKT 488
Q +S +R+G+S Y E Y+ ++NK+ D L+TTS T
Sbjct: 481 QPRCQESTHADRRMGHSVCYDSETKTLYVYGGSKNKRWFSDVHKLDTTSWT 531
>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
Length = 508
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 288 VNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPEN-NLEYLKLATQNKKAIIDEQ 464
VN D+ KLR + S K K K+I S +PEN + + LA +K + +
Sbjct: 46 VNNNEDVKNAKLRGIFVFEVSPVKHKRKKIKQMRSLLPENRKITCVALALTSKIPVYESA 105
Query: 465 LLE 473
+ +
Sbjct: 106 VCQ 108
>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 249 GCFDNLERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLEYLKL 428
G D N K V L K+++ L SKS K+S I YI L + +
Sbjct: 476 GILDRYLTNKPKYVK-PLQYSNEKVKRYCTLLDSKSSKESLNISLDRQYIILYTLYKITI 534
Query: 429 ATQNKKAIIDEQLLE 473
T+N+ ++++ E
Sbjct: 535 TTENEFSVVEGDKFE 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,445
Number of Sequences: 59808
Number of extensions: 277934
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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