Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0603
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical ...    33   0.26 
Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    28   7.4  
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC026301-9|AAK68890.2|  313|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical
           protein F38H12.5 protein.
          Length = 292

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = -2

Query: 462 VHQL*LSYFELLILSTPN----YSQVYMIHCFLFFWISFYSLKLLAVQAFLISS*KYLIS 295
           ++ + + +F L IL T      +S++  I  F+ FW  +      A  AFLI+S +   +
Sbjct: 54  LYSITIIFFLLSILITTTSFEGFSRLEEISIFVLFWAKYMIGSTRAFLAFLIASDRTWAT 113

Query: 294 Y*LVSICFFPNYQS-TPNTFSVLFIFI 217
           Y    + FF NY+S  PN F V  +F+
Sbjct: 114 Y--FPLYFF-NYRSYIPNMFIVALVFM 137


>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +3

Query: 345 ASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAIIDEQ 464
           A K +++++R GN + YIP ++ + LK  ++  + I +++
Sbjct: 170 AKKRRERARREGNQDGYIPLDDTQKLKSKSERNRLIREDE 209


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +3

Query: 345 ASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAIIDEQ 464
           A K +++++R GN + YIP ++ + LK  ++  + I +++
Sbjct: 170 AKKRRERARREGNQDGYIPLDDTQKLKSKSERNRLIREDE 209


>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 567 TNSNIDPSKFIEVQPKFLNSEISR----QETGLDVLDDEQVVPKVNYR 698
           T  + D  KFI+V  K  NSE S+    Q T +++ +DE   P  N+R
Sbjct: 291 TECSSDSFKFIDVISKLQNSENSKWLQAQPTTIEMNEDEDQSPAANHR 338


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 567 TNSNIDPSKFIEVQPKFLNSEISR----QETGLDVLDDEQVVPKVNYR 698
           T  + D  KFI+V  K  NSE S+    Q T +++ +DE   P  N+R
Sbjct: 343 TECSSDSFKFIDVISKLQNSENSKWLQAQPTTIEMNEDEDQSPAANHR 390


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 333 EQLTASKSKKKSKRIGNSESYIP--ENNLEYLKLAT---QNKKAIIDEQ 464
           EQ+   K  KKSK+   SES  P  ++++++L   T   +  + +++EQ
Sbjct: 546 EQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPEQVVEEQ 594


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 333 EQLTASKSKKKSKRIGNSESYIP--ENNLEYLKLAT---QNKKAIIDEQ 464
           EQ+   K  KKSK+   SES  P  ++++++L   T   +  + +++EQ
Sbjct: 463 EQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPEQVVEEQ 511


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 333 EQLTASKSKKKSKRIGNSESYIP--ENNLEYLKLAT---QNKKAIIDEQ 464
           EQ+   K  KKSK+   SES  P  ++++++L   T   +  + +++EQ
Sbjct: 546 EQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPEQVVEEQ 594


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 267 ERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLEYL-KLATQNK 443
           +R+ S   + +++  R+K +K ++    K  +K KR  N  S   E+  E   K + ++K
Sbjct: 243 KRDDSSDDDSEMERRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDEDEEEKPEKRSKKSK 302

Query: 444 KAIID 458
           KA+ID
Sbjct: 303 KAVID 307


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 298 FILTCFDMFLSKLSKHPQHLQC 233
           F+L CF M ++ LS    HLQC
Sbjct: 269 FLLRCFTMLITSLSVPGIHLQC 290


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
 Frame = +3

Query: 255  FDNLERNISKQVN--MKL-DIFRRKLRKLEQLTASKS--KKKSKRIGNSESYIPENNLEY 419
            F+ LER  ++Q    MK+ D+ R   RK+EQL   K+  + +++++  +++   +++   
Sbjct: 911  FNVLERKYNEQHKKVMKMNDVLREYERKIEQLNMEKTDLENENQKLRETQNR-QDSHYSN 969

Query: 420  LKLATQNKKAIIDE 461
            L+     K ++IDE
Sbjct: 970  LEKEVMEKSSLIDE 983


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
            protein Y47D3B.5b protein.
          Length = 1136

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
 Frame = +3

Query: 333  EQLTASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAII-------DEQLLETTSKTI 491
            E L ASK  KKS+ I  S S IP N+L   +  T  ++ ++         QL+  ++ T 
Sbjct: 736  EDLKASKKSKKSRSI--SSSPIPPNSLHEEETQTPLRQNMVHMATDPCTSQLVHRSTVTS 793

Query: 492  PH*RNKSDDIMSRAMLHNKIPAEGPTNSNIDPSKFIEVQPKF 617
            P  R  ++  M + M+   +        + + S   E  P F
Sbjct: 794  PVGREDAETEMPQKMMDRMVSPVSTAIRDQNTSPVEEQTPDF 835


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
            protein Y47D3B.5a protein.
          Length = 1088

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
 Frame = +3

Query: 333  EQLTASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAII-------DEQLLETTSKTI 491
            E L ASK  KKS+ I  S S IP N+L   +  T  ++ ++         QL+  ++ T 
Sbjct: 736  EDLKASKKSKKSRSI--SSSPIPPNSLHEEETQTPLRQNMVHMATDPCTSQLVHRSTVTS 793

Query: 492  PH*RNKSDDIMSRAMLHNKIPAEGPTNSNIDPSKFIEVQPKF 617
            P  R  ++  M + M+   +        + + S   E  P F
Sbjct: 794  PVGREDAETEMPQKMMDRMVSPVSTAIRDQNTSPVEEQTPDF 835


>AC026301-9|AAK68890.2|  313|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.11 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 258 DNLERNISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGN 383
           DNL++ +S  +N+ LDI    L KLE +    ++K  K + N
Sbjct: 3   DNLKKPVSL-LNLPLDITNLVLEKLEPMDRLSARKVCKNLRN 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,073
Number of Sequences: 27780
Number of extensions: 236219
Number of successful extensions: 883
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)