Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0603
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66150.1 68414.m07508 leucine-rich repeat protein kinase, put...    30   1.7  
At5g53440.1 68418.m06641 expressed protein                             29   2.2  
At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing ...    29   3.0  
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ...    29   3.9  
At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical t...    28   5.2  
At5g16160.1 68418.m01889 expressed protein                             28   6.8  
At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH) domain...    27   9.0  

>At1g66150.1 68414.m07508 leucine-rich repeat protein kinase,
           putative (TMK1) identical to protein kinase TMK1
           gi|166888|gb|AAA32876, SP|P43298 Putative receptor
           protein kinase TMK1 precursor (EC 2.7.1.-) {Arabidopsis
           thaliana}
          Length = 942

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 649 PVSCRDISEFKNFGWTSINLLGSMFEFVGPS--AGILLCSIALDIISSDL 506
           P S R+ S  +NF   S N+ GS+  F+GP    G+ +  +A + +  +L
Sbjct: 153 PESLRNASALQNFSANSANVSGSLPGFLGPDEFPGLSILHLAFNNLEGEL 202


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 312 RRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLE 416
           +  LR  E+LT  +SKKKSK   N   + P++ L+
Sbjct: 264 KEHLRSDEKLTRDESKKKSKFQDNDHGHEPDSELD 298


>At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427,
           SP|Q9Y4I5 Tesmin (Metallothionein-like 5,
           testis-specific) {Homo sapiens}; contains Pfam profile
           PF03638: Tesmin/TSO1-like CXC domain
          Length = 603

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459 EQLLETTSKTIPH*RNKSDDIMSRAMLHNKIPAEGPTNSN---IDPSKFIEVQPKFLNSE 629
           E  L ++++  P   N + D+   A  HN+    GP  SN   +D SK   + P  L   
Sbjct: 402 ETSLASSAQDQPQGNNNAADVEMVATDHNQADKSGPEESNSDGVDASKVTPLSPATLALM 461

Query: 630 ISRQET 647
              Q+T
Sbjct: 462 CDEQDT 467


>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 345

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 291 NMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAIIDEQLL 470
           NM+ D+F++ L+ +E    +K   KS ++G +E +    N E+L + T   K + +    
Sbjct: 57  NMRRDVFKKNLKFIENF--NKKGNKSYKLGVNE-FADWTNEEFLAIHT-GLKGLTEVSPS 112

Query: 471 ETTSKTI 491
           +  +KTI
Sbjct: 113 KVVAKTI 119


>At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical to
           atToc33 protein (GI:11557973) [Arabidopsis thaliana];
           Carboxyl-terminal end highly similar to GTP-binding
           protein SP:U43377, location of EST gb|AA394770 and
           gb|R30089; identical to cDNA for chloroplast atToc33
           protein GI:11557972
          Length = 297

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 348 SKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAI-IDEQLLE 473
           SK+ K  K + N E++IP        +AT  +KAI +D+++++
Sbjct: 214 SKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVD 256


>At5g16160.1 68418.m01889 expressed protein
          Length = 133

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/71 (21%), Positives = 34/71 (47%)
 Frame = +3

Query: 282 KQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLEYLKLATQNKKAIIDE 461
           KQ++   ++ +R+++        K K K+ +   S++     + + LK  T +  + ++E
Sbjct: 41  KQISKLQELHKRRMQIKANAKIHKKKPKASKNSQSKAIEDGESSKKLKEPTSSSSSTLEE 100

Query: 462 QLLETTSKTIP 494
           Q    T  T+P
Sbjct: 101 QNHNKTVVTVP 111


>At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to Chain A,
           Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
           Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
           (GP:13399999) {Homo sapiens}; supporting cDNA
           gi|26451912|dbj|AK118440.1|
          Length = 611

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 276 ISKQVNMKLDIFRRKLRKLEQLTASKSKKKSKRIGNSESYIPENNLEYLK 425
           + K    KLD+    +R    L A  +K  SKR   SE    E+  EY++
Sbjct: 312 LEKITQKKLDLMDEFIRDKSALAAQTTKSSSKRSNKSEE--EESKTEYIQ 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,359
Number of Sequences: 28952
Number of extensions: 213010
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)